Wang QS, Hasegawa T, Namkoong H, Saiki R, Edahiro R, Sonehara K, Tanaka H, Azekawa S, Chubachi S, Takahashi Y, Sakaue S, Namba S, Yamamoto K, Shiraishi Y, Chiba K, Tanaka H, Makishima H, Nannya Y, Zhang Z, Tsujikawa R, Koike R, Takano T, Ishii M, Kimura A, Inoue F, Kanai T, Fukunaga K, Ogawa S, Imoto S, Miyano S, Okada Y, Japan COVID-19 Task Force: Statistically and functionally fine-mapped blood eQTLs and pQTLs from 1,405 humans reveal distinct regulation patterns and disease relevance. Nature genetics. 2024.09; ( PubMed , DOI )

Maruhashi K, Kashima H, Miyano S, Park H: Meta graphical lasso: uncovering hidden interactions among latent mechanisms. Scientific reports. 2024.08; 14 (1): 18105. ( PubMed , DOI )

Ashida S, Kawada C, Tanaka H, Kurabayashi A, Yagyu KI, Sakamoto S, Maejima K, Miyano S, Daibata M, Nakagawa H, Inoue K: Cutibacterium acnes invades prostate epithelial cells to induce BRCAness as a possible pathogen of prostate cancer. The Prostate. 2024.08; 84 (11): 1056-1066. ( PubMed , DOI )

Watanabe K, Tasaka K, Ogata H, Kato S, Ueno H, Umeda K, Isobe T, Kubota Y, Sekiguchi M, Kimura S, Sato-Otsubo A, Hiwatari M, Ushiku T, Kato M, Oka A, Miyano S, Ogawa S, Takita J: Inhibition of the galactosyltransferase C1GALT1 reduces osteosarcoma cell proliferation by interfering with ERK signaling and cell cycle progression. Cancer gene therapy. 2024.07; 31 (7): 1049-1059. ( PubMed , DOI )

Iyoda S, Yoshida K, Shoji K, Ito N, Tanaka M, Nannya Y, Yamato G, Tsujimoto S, Shiba N, Hayashi Y, Shiozawa Y, Shiraishi Y, Chiba K, Okada A, Tanaka H, Miyano S, Koga Y, Goto H, Moritake H, Terui K, Ito E, Kiyokawa N, Tomizawa D, Taga T, Tawa A, Takita J, Nishikori M, Adachi S, Ogawa S, Matsuo H: KRAS G12 mutations as adverse prognostic factors in KMT2A-rearranged acute myeloid leukemia. Leukemia. 2024.07; 38 (7): 1609-1612. ( PubMed , DOI )

Azekawa S, Maetani T, Chubachi S, Asakura T, Tanabe N, Shiraishi Y, Namkoong H, Tanaka H, Shimada T, Fukushima T, Otake S, Nakagawara K, Watase M, Terai H, Sasaki M, Ueda S, Kato Y, Harada N, Suzuki S, Yoshida S, Tateno H, Yamada Y, Jinzaki M, Hirai T, Okada Y, Koike R, Ishii M, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K: CT-derived vertebral bone mineral density is a useful biomarker to predict COVID-19 outcome. Bone. 2024.07; 184 117095. ( PubMed , DOI )

Sato T, Yoshida K, Toki T, Kanezaki R, Terui K, Saiki R, Ojima M, Ochi Y, Mizuno S, Yoshihara M, Uechi T, Kenmochi N, Tanaka S, Matsubayashi J, Kisai K, Kudo K, Yuzawa K, Takahashi Y, Tanaka T, Yamamoto Y, Kobayashi A, Kamio T, Sasaki S, Shiraishi Y, Chiba K, Tanaka H, Muramatsu H, Hama A, Hasegawa D, Sato A, Koh K, Karakawa S, Kobayashi M, Hara J, Taneyama Y, Imai C, Hasegawa D, Fujita N, Yoshitomi M, Iwamoto S, Yamato G, Saida S, Kiyokawa N, Deguchi T, Ito M, Matsuo H, Adachi S, Hayashi Y, Taga T, Saito AM, Horibe K, Watanabe K, Tomizawa D, Miyano S, Takahashi S, Ogawa S, Ito E: Landscape of driver mutations and their clinical effects on Down syndrome-related myeloid neoplasms. Blood. 2024.06; 143 (25): 2627-2643. ( PubMed , DOI )

Tanaka H, Chubachi S, Asakura T, Namkoong H, Azekawa S, Otake S, Nakagawara K, Fukushima T, Lee H, Watase M, Sakurai K, Kusumoto T, Masaki K, Kamata H, Ishii M, Hasegawa N, Okada Y, Koike R, Kitagawa Y, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K: Prognostic significance of chronic kidney disease and impaired renal function in Japanese patients with COVID-19. BMC infectious diseases. 2024.05; 24 (1): 527. ( PubMed , DOI )

Otake S, Shiraishi Y, Chubachi S, Tanabe N, Maetani T, Asakura T, Namkoong H, Shimada T, Azekawa S, Nakagawara K, Tanaka H, Fukushima T, Watase M, Terai H, Sasaki M, Ueda S, Kato Y, Harada N, Suzuki S, Yoshida S, Tateno H, Yamada Y, Jinzaki M, Hirai T, Okada Y, Koike R, Ishii M, Hasegawa N, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K: Lung volume measurement using chest CT in COVID-19 patients: a cohort study in Japan. BMJ open respiratory research. 2024.04; 11 (1): ( PubMed , DOI )

Nakagawara K, Shiraishi Y, Chubachi S, Tanabe N, Maetani T, Asakura T, Namkoong H, Tanaka H, Shimada T, Azekawa S, Otake S, Fukushima T, Watase M, Terai H, Sasaki M, Ueda S, Kato Y, Harada N, Suzuki S, Yoshida S, Tateno H, Yamada Y, Jinzaki M, Hirai T, Okada Y, Koike R, Ishii M, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K: Integrated assessment of computed tomography density in pectoralis and erector spinae muscles as a prognostic biomarker for coronavirus disease 2019. Clinical nutrition (Edinburgh, Scotland). 2024.03; 43 (3): 815-824. ( PubMed , DOI )

Park H, Miyano S: Differential Gene Regulatory Network Analysis between Azacitidine-Sensitive and -Resistant Cell Lines. International journal of molecular sciences. 2024.03; 25 (6): ( PubMed , DOI )

Ito S, Ono K, Miyano S: Large-scale WGS Analysis on the supercomputer Fugaku ICBBB '24: Proceedings of the 2024 14th International Conference on Bioscience, Biochemistry and Bioinformatics. 2024.01; 14-20.

Fukushima T, Maetani T, Chubachi S, Tanabe N, Asakura T, Namkoong H, Tanaka H, Shimada T, Azekawa S, Otake S, Nakagawara K, Watase M, Shiraishi Y, Terai H, Sasaki M, Ueda S, Kato Y, Harada N, Suzuki S, Yoshida S, Tateno H, Yamada Y, Jinzaki M, Hirai T, Okada Y, Koike R, Ishii M, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K: Epicardial adipose tissue measured from analysis of adipose tissue area using chest CT imaging is the best potential predictor of COVID-19 severity. Metabolism: clinical and experimental. 2024.01; 150 155715. ( PubMed , DOI )

Okawa Y, Sasagawa S, Kato H, Johnson TA, Nagaoka K, Kobayashi Y, Hayashi A, Shibayama T, Maejima K, Tanaka H, Miyano S, Shibahara J, Nishizuka S, Hirano S, Seto Y, Iwaya T, Kakimi K, Yasuda T, Nakagawa H: Immuno-genomic analysis reveals eosinophilic feature and favorable prognosis of female non-smoking esophageal squamous cell carcinomas. Cancer letters. 2024.01; 581 216499. ( PubMed , DOI )

Yuta Matsubara, Hiroki Kiyohara, Yohei Mikami, Kosaku Nanki, Ho Namkoong, Shotaro Chubachi, Hiromu Tanaka, Shuhei Azekawa, Shinya Sugimoto, Yusuke Yoshimatsu, Tomohisa Sujino, Kaoru Takabayashi, Naoki Hosoe, Toshiro Sato, Makoto Ishii, Naoki Hasegawa, Yukinori Okada, Ryuji Koike, Yuko Kitagawa, Akinori Kimura, Seiya Imoto, Satoru Miyano, Seishi Ogawa, Koichi Fukunaga, Takanori Kanai, : Gastrointestinal symptoms in COVID-19 and disease severity: a Japanese registry-based retrospective cohort study. J Gastroenterol. 2024.01; ( PubMed , DOI )

Park H, Miyano S: Sparse spectral graph analysis and its application to gastric cancer drug resistance-specific molecular interplays identification. PloS one. 2024; 19 (7): e0305386. ( PubMed , DOI )

Kawachi K, Tang X, Kasajima R, Yamanaka T, Shimizu E, Katayama K, Yamaguchi R, Yokoyama K, Yamaguchi K, Furukawa Y, Miyano S, Imoto S, Yoshioka E, Washimi K, Okubo Y, Sato S, Yokose T, Miyagi Y: Genetic analysis of low-grade adenosquamous carcinoma of the breast progressing to high-grade metaplastic carcinoma. Breast cancer research and treatment. 2023.12; 202 (3): 563-573. ( PubMed , DOI )

Wang QS, Edahiro R, Namkoong H, Hasegawa T, Shirai Y, Sonehara K, Japan COVID-19 Task Force, Kumanogoh A, Ishii M, Koike R, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K, Okada Y: Estimating gene-level false discovery probability improves eQTL statistical fine-mapping precision. NAR genomics and bioinformatics. 2023.12; 5 (4): lqad090. ( PubMed , DOI )

Kusumoto T, Chubachi S, Namkoong H, Tanaka H, Lee H, Otake S, Nakagawara K, Fukushima T, Morita A, Watase M, Asakura T, Masaki K, Kamata H, Ishii M, Hasegawa N, Harada N, Ueda T, Ueda S, Ishiguro T, Arimura K, Saito F, Yoshiyama T, Nakano Y, Mutoh Y, Suzuki Y, Edahiro R, Murakami K, Sato Y, Okada Y, Koike R, Kitagawa Y, Tokunaga K, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K: Characteristics of patients with COVID-19 who have deteriorating chest X-ray findings within 48 h: a retrospective cohort study. Scientific reports. 2023.12; 13 (1): 22054. ( PubMed , DOI )

Masatoshi Takagi, Akihiro Hoshino, Kristine Bousset, Jule Röddecke, Hanna Luisa Martin, Iulia Folcut, Dan Tomomasa, Xi Yang, Junya Kobayashi, Naoki Sakata, Kenichi Yoshida, Satoru Miyano, Seishi Ogawa, Seiji Kojima, Tomohiro Morio, Thilo Dörk, Hirokazu Kanegane: Bone Marrow Failure and Immunodeficiency Associated with Human RAD50 Variants. J Clin Immunol. 2023.11; 43 (8): 2136-2145. ( PubMed , DOI )

Sakurai K, Chubachi S, Asakura T, Namkoong H, Tanaka H, Azekawa S, Shimada T, Otake S, Nakagawara K, Fukushima T, Lee H, Watase M, Kusumoto T, Masaki K, Kamata H, Ishii M, Hasegawa N, Okada Y, Koike R, Kitagawa Y, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K: Prognostic significance of hypertension history and blood pressure on admission in Japanese patients with coronavirus disease 2019: integrative analysis from the Japan COVID-19 Task Force. Hypertension research : official journal of the Japanese Society of Hypertension. 2023.11; 47 (3): 639-648. ( PubMed , DOI )

Tanaka H, Maetani T, Chubachi S, Tanabe N, Shiraishi Y, Asakura T, Namkoong H, Shimada T, Azekawa S, Otake S, Nakagawara K, Fukushima T, Watase M, Terai H, Sasaki M, Ueda S, Kato Y, Harada N, Suzuki S, Yoshida S, Tateno H, Yamada Y, Jinzaki M, Hirai T, Okada Y, Koike R, Ishii M, Hasegawa N, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K: Clinical utilization of artificial intelligence-based COVID-19 pneumonia quantification using chest computed tomography - a multicenter retrospective cohort study in Japan. Respiratory research. 2023.10; 24 (1): 241. ( PubMed , DOI )

Kobayashi Y, Niida A, Nagayama S, Saeki K, Haeno H, Takahashi KK, Hayashi S, Ozato Y, Saito H, Hasegawa T, Nakamura H, Tobo T, Kitagawa A, Sato K, Shimizu D, Hirata H, Hisamatsu Y, Toshima T, Yonemura Y, Masuda T, Mizuno S, Kawazu M, Kohsaka S, Ueno T, Mano H, Ishihara S, Uemura M, Mori M, Doki Y, Eguchi H, Oshima M, Suzuki Y, Shibata T, Mimori K: Subclonal accumulation of immune escape mechanisms in microsatellite instability-high colorectal cancers. British journal of cancer. 2023.10; 129 (7): 1105-1118. ( PubMed , DOI )

Nishimura T, Kakiuchi N, Yoshida K, Sakurai T, Kataoka TR, Kondoh E, Chigusa Y, Kawai M, Sawada M, Inoue T, Takeuchi Y, Maeda H, Baba S, Shiozawa Y, Saiki R, Nakagawa MM, Nannya Y, Ochi Y, Hirano T, Nakagawa T, Inagaki-Kawata Y, Aoki K, Hirata M, Nanki K, Matano M, Saito M, Suzuki E, Takada M, Kawashima M, Kawaguchi K, Chiba K, Shiraishi Y, Takita J, Miyano S, Mandai M, Sato T, Takeuchi K, Haga H, Toi M, Ogawa S: Evolutionary histories of breast cancer and related clones. Nature. 2023.08; 620 (7974): 607-614. ( PubMed , DOI )

Suzuki M, Kasajima R, Yokose T, Shimizu E, Hatakeyama S, Yamaguchi K, Yokoyama K, Katayama K, Yamaguchi R, Furukawa Y, Miyano S, Imoto S, Shinozaki-Ushiku A, Ushiku T, Miyagi Y: KMT2C expression and DNA homologous recombination repair factors in lung cancers with a high-grade fetal adenocarcinoma component. Translational lung cancer research. 2023.08; 12 (8): 1738-1751. ( PubMed , DOI )

Tanaka H, Chubachi S, Asakura T, Namkoong H, Azekawa S, Otake S, Nakagawara K, Fukushima T, Lee H, Watase M, Sakurai K, Kusumoto T, Masaki K, Kamata H, Ishii M, Hasegawa N, Okada Y, Koike R, Kitagawa Y, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K: Characteristics and clinical effectiveness of COVID-19 vaccination in hospitalized patients in Omicron-dominated epidemic wave - a nationwide study in Japan. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases. 2023.07; 132 84-88. ( PubMed , DOI )

Hara Y, Shiba N, Yoshida K, Yamato G, Kaburagi T, Shiraishi Y, Ohki K, Shiozawa Y, Kawamura M, Kawasaki H, Sotomatsu M, Takizawa T, Matsuo H, Shimada A, Kiyokawa N, Tomizawa D, Taga T, Ito E, Horibe K, Miyano S, Adachi S, Taki T, Ogawa S, Hayashi Y: TP53 and RB1 alterations characterize poor prognostic subgroups in pediatric acute myeloid leukemia. Genes, chromosomes & cancer. 2023.07; 62 (7): 412-422. ( PubMed , DOI )

Tanaka H, Chubachi S, Namkoong H, Sato Y, Asakura T, Lee H, Azekawa S, Otake S, Nakagawara K, Fukushima T, Watase M, Sakurai K, Kusumoto T, Kondo Y, Masaki K, Kamata H, Ishii M, Kaneko Y, Hasegawa N, Ueda S, Sasaki M, Izumo T, Inomata M, Miyazawa N, Kimura Y, Suzuki Y, Harada N, Ichikawa M, Takata T, Ishikura H, Yoshiyama T, Kokuto H, Murakami K, Sano H, Ueda T, Kuwahara N, Fujiwara A, Ogura T, Inoue T, Asami T, Mutoh Y, Nakachi I, Baba R, Nishi K, Tani M, Kagyo J, Hashiguchi M, Oguma T, Asano K, Nishikawa M, Watanabe H, Okada Y, Koike R, Kitagawa Y, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K: Propensity-Score Matched Analysis of the Effectiveness of Baricitinib in Patients With Coronavirus Disease 2019 (COVID-19) Using Nationwide Real-World Data: An Observational Matched Cohort Study From the Japan COVID-19 Task Force. Open forum infectious diseases. 2023.07; 10 (7): ofad311. ( PubMed , DOI )

Ozawa T, Asakura T, Chubachi S, Namkoong H, Tanaka H, Lee K, Fukushima T, Otake S, Nakagawara K, Watase M, Masaki K, Kamata H, Ishii M, Hasegawa N, Harada N, Ueda T, Ueda S, Ishiguro T, Arimura K, Saito F, Yoshiyama T, Nakano Y, Mutoh Y, Suzuki Y, Edahiro R, Murakami K, Okada Y, Koike R, Kitagawa Y, Tokunaga K, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K, Japan COVID-19 Task Force: Use of the neutrophil-to-lymphocyte ratio and an oxygen requirement to predict disease severity in patients with COVID-19. Respiratory investigation. 2023.07; 61 (4): 454-459. ( PubMed , DOI )

Latorre AAE, Nakamura K, Seino K, Hasegawa T.: Vector autoregression for forecasting the number of COVID-19 cases and analyzing behavioral indicators in the Philippines: an ecologic time-trend study, JMIR Form Res . 2023.06; 7 e46357. ( DOI )

Toshiki Sera, Norio Otani, Hideo Bannai, Takanori Hasegawa, Takehiro Umemura, Hideki Honda, Akio Kimura: The current status of emergency departments in secondary emergency medical institutions in Japan: a questionnaire survey. International Journal of Emergency Medicine. 2023.06; 16 (1): 40. ( PubMed , DOI )

Ryuya Edahiro, Yuya Shirai, Yusuke Takeshima, Shuhei Sakakibara, Yuta Yamaguchi, Teruaki Murakami, Takayoshi Morita, Yasuhiro Kato, Yu-Chen Liu, Daisuke Motooka, Yoko Naito, Ayako Takuwa, Fuminori Sugihara, Kentaro Tanaka, James B Wing, Kyuto Sonehara, Yoshihiko Tomofuji; Japan COVID-19 Task Force; Ho Namkoong, Hiromu Tanaka, Ho Lee, Koichi Fukunaga, Haruhiko Hirata, Yoshito Takeda, Daisuke Okuzaki, Atsushi Kumanogoh, Yukinori Okada: Single-cell analyses and host genetics highlight the role of innate immune cells in COVID-19 severity. Nat Genet. 2023.05; 55 (5): 753-767. ( PubMed , DOI )

Azekawa S, Chubachi S, Asakura T, Namkoong H, Sato Y, Edahiro R, Lee H, Tanaka H, Otake S, Nakagawara K, Fukushima T, Watase M, Sakurai K, Kusumoto T, Masaki K, Kamata H, Ishii M, Hasegawa N, Okada Y, Koike R, Kitagawa Y, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K, Japan COVID-19 Task Force: Serum KL-6 levels predict clinical outcomes and are associated with MUC1 polymorphism in Japanese patients with COVID-19. BMJ open respiratory research. 2023.05; 10 (1): ( PubMed , DOI )

Yamaguchi K, Nakagawa S, Saku A, Isobe Y, Yamaguchi R, Sheridan P, Takane K, Ikenoue T, Zhu C, Miura M, Okawara Y, Nagatoishi S, Kozuka-Hata H, Oyama M, Aikou S, Ahiko Y, Shida D, Tsumoto K, Miyano S, Imoto S, Furukawa Y: Bromodomain protein BRD8 regulates cell cycle progression in colorectal cancer cells through a TIP60-independent regulation of the pre-RC complex. iScience. 2023.04; 26 (4): 106563. ( PubMed , DOI )

Kitagawa A, Osawa T, Noda M, Kobayashi Y, Aki S, Nakano Y, Saito T, Shimizu D, Komatsu H, Sugaya M, Takahashi J, Kosai K, Takao S, Motomura Y, Sato K, Hu Q, Fujii A, Wakiyama H, Tobo T, Uchida H, Sugimachi K, Shibata K, Utsunomiya T, Kobayashi S, Ishii H, Hasegawa T, Masuda T, Matsui Y, Niida A, Soga T, Suzuki Y, Miyano S, Aburatani H, Doki Y, Eguchi H, Mori M, Nakayama KI, Shimamura T, Shibata T, Mimori K: Convergent genomic diversity and novel BCAA metabolism in intrahepatic cholangiocarcinoma. British journal of cancer. 2023.04; 128 (12): 2206-2217. ( PubMed , DOI )

Kaburagi T, Shiba N, Yamato G, Yoshida K, Tabuchi K, Ohki K, Ishikita E, Hara Y, Shiraishi Y, Kawasaki H, Sotomatsu M, Takizawa T, Taki T, Kiyokawa N, Tomizawa D, Horibe K, Miyano S, Taga T, Adachi S, Ogawa S, Hayashi Y: UBTF-internal tandem duplication as a novel poor prognostic factor in pediatric acute myeloid leukemia. Genes, chromosomes & cancer. 2023.04; 62 (4): 202-209. ( PubMed , DOI )

Washimi K, Kasajima R, Shimizu E, Sato S, Okubo Y, Yoshioka E, Narimatsu H, Hiruma T, Katayama K, Yamaguchi R, Yamaguchi K, Furukawa Y, Miyano S, Imoto S, Yokose T, Miyagi Y: Histological markers, sickle-shaped blood vessels, myxoid area, and infiltrating growth pattern help stratify the prognosis of patients with myxofibrosarcoma/undifferentiated sarcoma. Scientific reports. 2023.04; 13 (1): 6744. ( PubMed , DOI )

Nakagawara K, Kamata H, Chubachi S, Namkoong H, Tanaka H, Lee H, Otake S, Fukushima T, Kusumoto T, Morita A, Azekawa S, Watase M, Asakura T, Masaki K, Ishii M, Endo A, Koike R, Ishikura H, Takata T, Matsushita Y, Harada N, Kokutou H, Yoshiyama T, Kataoka K, Mutoh Y, Miyawaki M, Ueda S, Ono H, Ono T, Shoko T, Muranaka H, Kawamura K, Mori N, Mochimaru T, Fukui M, Chihara Y, Nagasaki Y, Okamoto M, Amishima M, Odani T, Tani M, Nishi K, Shirai Y, Edahiro R, Ando A, Hashimoto N, Ogura S, Kitagawa Y, Kita T, Kagaya T, Kimura Y, Miyazawa N, Tsuchida T, Fujitani S, Murakami K, Sano H, Sato Y, Tanino Y, Otsuki R, Mashimo S, Kuramochi M, Hosoda Y, Hasegawa Y, Ueda T, Takaku Y, Ishiguro T, Fujiwara A, Kuwahara N, Kitamura H, Hagiwara E, Nakamori Y, Saito F, Kono Y, Abe S, Ishii T, Ohba T, Kusaka Y, Watanabe H, Masuda M, Watanabe H, Kimizuka Y, Kawana A, Kasamatsu Y, Hashimoto S, Okada Y, Takano T, Katayama K, Ai M, Kumanogoh A, Sato T, Tokunaga K, Imoto S, Kitagawa Y, Kimura A, Miyano S, Hasegawa N, Ogawa S, Kanai T, Fukunaga K, Japan COVID-19 Task Force: Diagnostic significance of secondary bacteremia in patients with COVID-19. Journal of infection and chemotherapy : official journal of the Japan Society of Chemotherapy. 2023.04; 29 (4): 422-426. ( PubMed , DOI )

Nakagawara K, Kamata H, Chubachi S, Namkoong H, Tanaka H, Lee H, Otake S, Fukushima T, Kusumoto T, Morita A, Azekawa S, Watase M, Asakura T, Masaki K, Ishii M, Endo A, Koike R, Ishikura H, Takata T, Matsushita Y, Harada N, Kokutou H, Yoshiyama T, Kataoka K, Mutoh Y, Miyawaki M, Ueda S, Ono H, Ono T, Shoko T, Muranaka H, Kawamura K, Mori N, Mochimaru T, Fukui M, Chihara Y, Nagasaki Y, Okamoto M, Amishima M, Odani T, Tani M, Nishi K, Shirai Y, Edahiro R, Ando A, Hashimoto N, Ogura S, Kitagawa Y, Kita T, Kagaya T, Kimura Y, Miyazawa N, Tsuchida T, Fujitani S, Murakami K, Sano H, Sato Y, Tanino Y, Otsuki R, Mashimo S, Kuramochi M, Hosoda Y, Hasegawa Y, Ueda T, Takaku Y, Ishiguro T, Fujiwara A, Kuwahara N, Kitamura H, Hagiwara E, Nakamori Y, Saito F, Kono Y, Abe S, Ishii T, Ohba T, Kusaka Y, Watanabe H, Masuda M, Watanabe H, Kimizuka Y, Kawana A, Kasamatsu Y, Hashimoto S, Okada Y, Takano T, Katayama K, Ai M, Kumanogoh A, Sato T, Tokunaga K, Imoto S, Kitagawa Y, Kimura A, Miyano S, Hasegawa N, Ogawa S, Kanai T, Fukunaga K, Japan COVID-19 Task Force: Impact of respiratory bacterial infections on mortality in Japanese patients with COVID-19: a retrospective cohort study. BMC pulmonary medicine. 2023.04; 23 (1): 146. ( PubMed , DOI )

Nannya Y, Tobiasson M, Sato S, Bernard E, Ohtake S, Takeda J, Creignou M, Zhao L, Kusakabe M, Shibata Y, Nakamura N, Watanabe M, Hiramoto N, Shiozawa Y, Shiraishi Y, Tanaka H, Yoshida K, Kakiuchi N, Makishima H, Nakagawa MM, Usuki K, Watanabe M, Imada K, Handa H, Taguchi M, Kiguchi T, Ohyashiki K, Ishikawa T, Takaori-Kondo A, Tsurumi H, Kasahara S, Chiba S, Naoe T, Miyano S, Papaemmanuil E, Miyazaki Y, Hellström Lindberg E, Ogawa S: Post-azacitidine clone size predicts outcome of patients with myelodysplastic syndromes and related myeloid neoplasms. Blood advances. 2023.03; 7 (14): 3624-3636. ( PubMed , DOI )

Park H, Imoto S, Miyano S: Gene Regulatory Network-Classifier: Gene Regulatory Network-Based Classifier and Its Applications to Gastric Cancer Drug (5-Fluorouracil) Marker Identification. Journal of computational biology : a journal of computational molecular cell biology. 2023.02; 30 (2): 223-243. ( PubMed , DOI )

Makishima H, Saiki R, Nannya Y, Korotev S, Gurnari C, Takeda J, Momozawa Y, Best S, Krishnamurthy P, Yoshizato T, Atsuta Y, Shiozawa Y, Iijima-Yamashita Y, Yoshida K, Shiraishi Y, Nagata Y, Kakiuchi N, Onizuka M, Chiba K, Tanaka H, Kon A, Ochi Y, Nakagawa MM, Okuda R, Mori T, Yoda A, Itonaga H, Miyazaki Y, Sanada M, Ishikawa T, Chiba S, Tsurumi H, Kasahara S, Müller-Tidow C, Takaori-Kondo A, Ohyashiki K, Kiguchi T, Matsuda F, Jansen JH, Polprasert C, Blombery P, Kamatani Y, Miyano S, Malcovati L, Haferlach T, Kubo M, Cazzola M, Kulasekararaj AG, Godley LA, Maciejewski JP, Ogawa S: Germ line DDX41 mutations define a unique subtype of myeloid neoplasms. Blood. 2023.02; 141 (5): 534-549. ( PubMed , DOI )

Park H, Imoto S, Miyano S: Comprehensive information-based differential gene regulatory networks analysis (CIdrgn): Application to gastric cancer and chemotherapy-responsive gene network identification. PloS one. 2023; 18 (8): e0286044. ( PubMed , DOI )

Watase M, Masaki K, Chubachi S, Namkoong H, Tanaka H, Lee H, Fukushima T, Otake S, Nakagawara K, Kusumoto T, Asakura T, Kamata H, Ishii M, Hasegawa N, Oyamada Y, Harada N, Ueda T, Ueda S, Ishiguro T, Arimura K, Saito F, Yoshiyama T, Nakano Y, Mutoh Y, Suzuki Y, Edahiro R, Sano H, Sato Y, Okada Y, Koike R, Kitagawa Y, Tokunaga K, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K, Japan COVID-19 Task Force: Impact of accumulative smoking exposure and chronic obstructive pulmonary disease on COVID-19 outcomes: report based on findings from the Japan COVID-19 task force. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases. 2022.12; 128 121-127. ( PubMed , DOI )

Ho Lee, Shotaro Chubachi, Ho Namkoong, Takanori Asakura, Hiromu Tanaka, Shiro Otake, Kensuke Nakagawara, Atsuho Morita, Takahiro Fukushima, Mayuko Watase, Tatsuya Kusumoto, Katsunori Masaki, Hirofumi Kamata, Makoto Ishii, Naoki Hasegawa, Norihiro Harada, Tetsuya Ueda, Soichiro Ueda, Takashi Ishiguro, Ken Arimura, Fukuki Saito, Takashi Yoshiyama, Yasushi Nakano, Yoshikazu Mutoh, Yusuke Suzuki, Koji Murakami, Yukinori Okada, Ryuji Koike, Yuko Kitagawa, Akinori Kimura, Seiya Imoto, Satoru Miyano, Seishi Ogawa, Takanori Kanai, Koichi Fukunaga, : Characteristics of hospitalized patients with COVID-19 during the first to fifth waves of infection: a report from the Japan COVID-19 Task Force. BMC Infect Dis. 2022.12; 22 (1): 935. ( PubMed , DOI )

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Park H, Yamaguchi R, Imoto S, Miyano S: Xprediction: Explainable EGFR-TKIs response prediction based on drug sensitivity specific gene networks. PloS one. 2022; 17 (5): e0261630. ( PubMed , DOI )

COVID-19 Host Genetics Initiative: Mapping the human genetic architecture of COVID-19. Nature. 2021.12; 600 (7889): 472-477. ( PubMed , DOI )

Hasegawa Takanori, Yamaguchi Rui, Kakuta Masanori, Ando Masataka, Songee Jung, Tokuda Itoyo, Murashita Koichi, Imoto Seiya: Application of state-space model with skew-t measurement noise to blood test value prediction APPLIED MATHEMATICAL MODELLING. 2021.12; 100 365-378. ( DOI )

Hiromu Tanaka, Ho Lee, Atsuho Morita, Ho Namkoong, Shotaro Chubachi, Hiroki Kabata, Hirofumi Kamata, Makoto Ishii, Naoki Hasegawa, Norihiro Harada, Tetsuya Ueda, Soichiro Ueda, Takashi Ishiguro, Ken Arimura, Fukuki Saito, Takashi Yoshiyama, Yasushi Nakano, Yoshikazu Mutoh, Yusuke Suzuki, Koji Murakami, Yukinori Okada, Ryuji Koike, Yuko Kitagawa, Katsushi Tokunaga, Akinori Kimura, Seiya Imoto, Satoru Miyano, Seishi Ogawa, Takanori Kanai, Koichi Fukunaga, The Japan COVID-19 Task Force: Clinical Characteristics of Patients with Coronavirus Disease (COVID-19): Preliminary Baseline Report of Japan COVID-19 Task Force, a Nationwide Consortium to Investigate Host Genetics of COVID-19. Int J Infect Dis. 2021.12; 113 74-81. ( PubMed , DOI )

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Yada E, Kasajima R, Niida A, Imoto S, Miyano S, Miyagi Y, Sasada T, Wada S: Possible Role of Cytochrome P450 1B1 in the Mechanism of Gemcitabine Resistance in Pancreatic Cancer. Biomedicines. 2021.10; 9 (10): ( PubMed , DOI )

Zhang YZ, Imoto S, Miyano S, Yamaguchi R: Enhancing breakpoint resolution with deep segmentation model: A general refinement method for read-depth based structural variant callers. PLoS computational biology. 2021.10; 17 (10): e1009186. ( PubMed , DOI )

Hirata H, Niida A, Kakiuchi N, Uchi R, Sugimachi K, Masuda T, Saito T, Kageyama SI, Motomura Y, Ito S, Yoshitake T, Tsurumaru D, Nishimuta Y, Yokoyama A, Hasegawa T, Chiba K, Shiraishi Y, Du J, Miura F, Morita M, Toh Y, Hirakawa M, Shioyama Y, Ito T, Akimoto T, Miyano S, Shibata T, Mori M, Suzuki Y, Ogawa S, Ishigami K, Mimori K: The Evolving Genomic Landscape of Esophageal Squamous Cell Carcinoma Under Chemoradiotherapy. Cancer research. 2021.10; 81 (19): 4926-4938. ( PubMed , DOI )

Matsui Y, Abe Y, Uno K, Miyano S: RoDiCE: robust differential protein co-expression analysis for cancer complexome. Bioinformatics (Oxford, England). 2021.09; 38 (5): 1269-1276. ( PubMed , DOI )

Mizuno S, Yamaguchi R, Hasegawa T, Hayashi S, Fujita M, Zhang F, Koh Y, Lee SY, Yoon SS, Shimizu E, Komura M, Fujimoto A, Nagai M, Kato M, Liang H, Miyano S, Zhang Z, Nakagawa H, Imoto S: Immunogenomic pan-cancer landscape reveals immune escape mechanisms and immunoediting histories. Scientific reports. 2021.08; 11 (1): 15713. ( PubMed , DOI )

Saiki R, Momozawa Y, Nannya Y, Nakagawa MM, Ochi Y, Yoshizato T, Terao C, Kuroda Y, Shiraishi Y, Chiba K, Tanaka H, Niida A, Imoto S, Matsuda K, Morisaki T, Murakami Y, Kamatani Y, Matsuda S, Kubo M, Miyano S, Makishima H, Ogawa S: Combined landscape of single-nucleotide variants and copy number alterations in clonal hematopoiesis. Nature medicine. 2021.07; 27 (7): 1239-1249. ( PubMed , DOI )

Fujii Y, Sato Y, Suzuki H, Kakiuchi N, Yoshizato T, Lenis AT, Maekawa S, Yokoyama A, Takeuchi Y, Inoue Y, Ochi Y, Shiozawa Y, Aoki K, Yoshida K, Kataoka K, Nakagawa MM, Nannya Y, Makishima H, Miyakawa J, Kawai T, Morikawa T, Shiraishi Y, Chiba K, Tanaka H, Nagae G, Sanada M, Sugihara E, Sato TA, Nakagawa T, Fukayama M, Ushiku T, Aburatani H, Miyano S, Coleman JA, Homma Y, Solit DB, Kume H, Ogawa S: Molecular classification and diagnostics of upper urinary tract urothelial carcinoma. Cancer cell. 2021.06; 39 (6): 793-809.e8. ( PubMed , DOI )

Ho Namkoong , Ryuya Edahiro , Koichi Fukunaga , Yuya Shirai , Kyuto Sonehara , Hiromu Tanaka , Ho Lee , Takanori Hasegawa , Masahiro Kanai , Tatsuhiko Naito , Kenichi Yamamoto , Ryunosuke Saiki , Takayoshi Hyugaji , Eigo Shimizu , Kotoe Katayama , Kazuhisa Takahashi , Norihiro Harada , Toshio Naito , Makoto Hiki , Yasushi Matsushita , Haruhi Takagi , Ryousuke Aoki , Ai Nakamura , Sonoko Harada , Hitoshi Sasano , Hiroki Kabata , Katsunori Masaki , Hirofumi Kamata , Shinnosuke Ikemura , Shotaro Chubachi , Satoshi Okamori , Hideki Terai , Atsuho Morita , Takanori Asakura , Junichi Sasaki , Hiroshi Morisaki , Yoshifumi Uwamino , Kosaku Nanki , Yohei Mikami , Sho Uchida , Shunsuke Uno , Rino Ishihara , Yuta Matsubara , Tomoyasu Nishimura , Takanori Ogawa , Takashi Ishiguro , Taisuke Isono , Shun Shibata , Yuma Matsui , Chiaki Hosoda , Kenji Takano , Takashi Nishida , Yoichi Kobayashi , Yotaro Takaku , Noboru Takayanagi , Soichiro Ueda , Ai Tada , Masayoshi Miyawaki , Masaomi Yamamoto , Eriko Yoshida , Reina Hayashi , Tomoki Nagasaka , Sawako Arai , Yutaro Kaneko , Kana Sasaki , Etsuko Tagaya , Masatoshi Kawana , Ken Arimura , Kunihiko Takahashi , Tatsuhiko Anzai , Satoshi Ito , Akifumi Endo , Yuji Uchimura , Yasunari Miyazaki , Takayuki Honda , Tomoya Tateishi , Shuji Tohda , Naoya Ichimura , Kazunari Sonobe , Chihiro Sassa , Jun Nakajima , Yasushi Nakano , Yukiko Nakajima , Ryusuke Anan , Ryosuke Arai , Yuko Kurihara , Yuko Harada , Kazumi Nishio , Tetsuya Ueda , Masanori Azuma , Ryuichi Saito , Toshikatsu Sado , Yoshimune Miyazaki , Ryuichi Sato , Yuki Haruta , Tadao Nagasaki , Yoshinori Yasui , Yoshinori Hasegawa , Yoshikazu Mutoh , Tomonori Sato , Reoto Takei , Satoshi Hagimoto , Yoichiro Noguchi , Yasuhiko Yamano , Hajime Sasano , Sho Ota , Yasushi Nakamori , Kazuhisa Yoshiya , Fukuki Saito , Tomoyuki Yoshihara , Daiki Wada , Hiromu Iwamura , Syuji Kanayama , Shuhei Maruyama , Takashi Yoshiyama , Ken Ohta , Hiroyuki Kokuto , Hideo Ogata , Yoshiaki Tanaka , Kenichi Arakawa , Masafumi Shimoda , Takeshi Osawa , Hiroki Tateno , Isano Hase , Shuichi Yoshida , Shoji Suzuki , Miki Kawada , Hirohisa Horinouchi , Fumitake Saito , Keiko Mitamura , Masao Hagihara , Junichi Ochi , Tomoyuki Uchida , Rie Baba , Daisuke Arai , Takayuki Ogura , Hidenori Takahashi , Shigehiro Hagiwara , Genta Nagao , Shunichiro Konishi , Ichiro Nakachi , Koji Murakami , Mitsuhiro Yamada , Hisatoshi Sugiura , Hirohito Sano , Shuichiro Matsumoto , Nozomu Kimura , Yoshinao Ono , Hiroaki Baba , Yusuke Suzuki , Sohei Nakayama , Keita Masuzawa , Shinichi Namba , Ken Suzuki , Nobuyuki Hizawa , Takayuki Shiroyama , Satoru Miyawaki , Yusuke Kawamura , Akiyoshi Nakayama , Hirotaka Matsuo , Yuichi Maeda , Takuro Nii , Yoshimi Noda , Takayuki Niitsu , Yuichi Adachi , Takatoshi Enomoto , Saori Amiya , Reina Hara , Toshihiro Kis: Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan 2021.05;

Yamaguchi K, Kasajima R, Takane K, Hatakeyama S, Shimizu E, Yamaguchi R, Katayama K, Arai M, Ishioka C, Iwama T, Kaneko S, Matsubara N, Moriya Y, Nomizu T, Sugano K, Tamura K, Tomita N, Yoshida T, Sugihara K, Nakamura Y, Miyano S, Imoto S, Furukawa Y, Ikenoue T: Application of targeted nanopore sequencing for the screening and determination of structural variants in patients with Lynch syndrome. Journal of human genetics. 2021.05; 66 (11): 1053-1060. ( PubMed , DOI )

Ochi Y, Yoshida K, Huang YJ, Kuo MC, Nannya Y, Sasaki K, Mitani K, Hosoya N, Hiramoto N, Ishikawa T, Branford S, Shanmuganathan N, Ohyashiki K, Takahashi N, Takaku T, Tsuchiya S, Kanemura N, Nakamura N, Ueda Y, Yoshihara S, Bera R, Shiozawa Y, Zhao L, Takeda J, Watatani Y, Okuda R, Makishima H, Shiraishi Y, Chiba K, Tanaka H, Sanada M, Takaori-Kondo A, Miyano S, Ogawa S, Shih LY: Clonal evolution and clinical implications of genetic abnormalities in blastic transformation of chronic myeloid leukaemia. Nature communications. 2021.05; 12 (1): 2833. ( PubMed , DOI )

Niida A, Mimori K, Shibata T, Miyano S: Modeling colorectal cancer evolution. Journal of human genetics. 2021.05; 66 (9): 869-878. ( PubMed , DOI )

Chen Li, Jiale Qin, Keisuke Kuroyanagi, Lu Lu, Masao Nagasaki, Miyano Satoru: High-speed parameter search of dynamic biological pathways from time-course transcriptomic profiles using high-level Petri net. Biosystems. 2021.03; 201 104332. ( PubMed , DOI )

Yoshihiro Ishida, Nobuyuki Kakiuchi, Kenichi Yoshida, Yoshikage Inoue, Hiroyuki Irie, Tatsuki R Kataoka, Masahiro Hirata, Takeru Funakoshi, Shigeto Matsushita, Hiroo Hata, Hiroshi Uchi, Yuki Yamamoto, Yasuhiro Fujisawa, Taku Fujimura, Ryunosuke Saiki, Kengo Takeuchi, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Atsushi Otsuka, Satoru Miyano, Kenji Kabashima, Seishi Ogawa: Unbiased Detection of Driver Mutations in Extramammary Paget Disease. Clin Cancer Res. 2021.03; 27 (6): 1756-1765. ( PubMed , DOI )

Kazuyuki Shimada, Kenichi Yoshida, Yasuhiro Suzuki, Chisako Iriyama, Yoshikage Inoue, Masashi Sanada, Keisuke Kataoka, Masaaki Yuge, Yusuke Takagi, Shigeru Kusumoto, Yasufumi Masaki, Takahiko Ito, Yuichiro Inagaki, Akinao Okamoto, Yachiyo Kuwatsuka, Masahiro Nakatochi, Satoko Shimada, Hiroaki Miyoshi, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Satoru Miyano, Yusuke Shiozawa, Yasuhito Nannya, Asako Okabe, Kei Kohno, Yoshiko Atsuta, Koichi Ohshima, Shigeo Nakamura, Seishi Ogawa, Akihiro Tomita, Hitoshi Kiyoi: Frequent genetic alterations in immune checkpoint-related genes in intravascular large B-cell lymphoma. Blood. 2021.03; 137 (11): 1491-1502. ( PubMed , DOI )

Taeko Kaburagi, Genki Yamato, Norio Shiba, Kenichi Yoshida, Yusuke Hara, Ken Tabuchi, Yuichi Shiraishi, Kentaro Ohki, Manabu Sotomatsu, Hirokazu Arakawa, Hidemasa Matsuo, Akira Shimada, Tomohiko Taki, Nobutaka Kiyokawa, Daisuke Tomizawa, Keizo Horibe, Satoru Miyano, Takashi Taga, Souichi Adachi, Seishi Ogawa, Yasuhide Hayashi: Clinical significance of RAS pathway alterations in pediatric acute myeloid leukemia. Haematologica. 2021.03; Online ahead of print (3): 583-592. ( PubMed , DOI )

Suzuki M, Kasajima R, Yokose T, Ito H, Shimizu E, Hatakeyama S, Yokoyama K, Yamaguchi R, Furukawa Y, Miyano S, Imoto S, Yoshioka E, Washimi K, Okubo Y, Kawachi K, Sato S, Miyagi Y: Comprehensive molecular analysis of genomic profiles and PD-L1 expression in lung adenocarcinoma with a high-grade fetal adenocarcinoma component. Translational lung cancer research. 2021.03; 10 (3): 1292-1304. ( PubMed , DOI )

Nobutaka Ebata, Masashi Fujita, Shota Sasagawa, Kazuhiro Maejima, Yuki Okawa, Yutaka Hatanaka, Tomoko Mitsuhashi, Ayako Oosawa-Tatsuguchi, Hiroko Tanaka, Satoru Miyano, Toru Nakamura, Satoshi Hirano, Hidewaki Nakagawa: Molecular Classification and Tumor Microenvironment Characterization of Gallbladder Cancer by Comprehensive Genomic and Transcriptomic Analysis. Cancers (Basel). 2021.02; 13 (4): 733. ( PubMed , DOI )

Kosuke Fujimoto, Yasumasa Kimura, Jessica R Allegretti, Mako Yamamoto, Yao-Zhong Zhang, Kotoe Katayama, Georg Tremmel, Yunosuke Kawaguchi, Masaki Shimohigoshi, Tetsuya Hayashi, Miho Uematsu, Kiyoshi Yamaguchi, Yoichi Furukawa, Yutaka Akiyama, Rui Yamaguchi, Sheila E Crowe, Peter B Ernst, Satoru Miyano, Hiroshi Kiyono, Seiya Imoto, Satoshi Uematsu: Functional Restoration of Bacteriomes and Viromes by Fecal Microbiota Transplantation. Gastroenterology. 2021.02; S0016-5085(21)00400-5 (6): 2089-2102.e12. ( PubMed , DOI )

Chantana Polprasert, Yasuhide Takeuchi, Hideki Makishima, Kitsada Wudhikarn, Nobuyuki Kakiuchi, Nichthida Tangnuntachai, Thamathorn Assanasen, Wimonmas Sitthi, Hamidah Muhamad, Panisinee Lawasut, Sunisa Kongkiatkamon, Udomsak Bunworasate, Koji Izutsu, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Satoru Miyano, Seishi Ogawa, Kenichi Yoshida, Ponlapat Rojnuckarin: Frequent mutations in HLA and related genes in extranodal NK/T cell lymphomas. Leuk Lymphoma. 2021.01; 62 (1): 95-103. ( PubMed , DOI )

Heewon Park, Koji Maruhashi, Rui Yamaguchi, Seiya Imoto, Satoru Miyano: Correction: Global gene network exploration based on explainable artificial intelligence approach. PLoS One. 2021.01; 16 (1): e0246380. ( PubMed , DOI )

Shotaro Sakimura, Satoshi Nagayama, Mitsuko Fukunaga, Qingjiang Hu, Akihiro Kitagawa, Yuta Kobayashi, Takanori Hasegawa, Miwa Noda, Yuta Kouyama, Dai Shimizu, Tomoko Saito, Atsushi Niida, Yusuke Tsuruda, Hajime Otsu, Yoshihiro Matsumoto, Hiroki Uchida, Takaaki Masuda, Keishi Sugimachi, Shin Sasaki, Kazutaka Yamada, Kazuki Takahashi, Hideki Innan, Yutaka Suzuki, Hiromi Nakamura, Yasushi Totoki, Shinichi Mizuno, Masanobu Ohshima, Tatsuhiro Shibata, Koshi Mimori: Impaired tumor immune response in metastatic tumors is a selective pressure for neutral evolution in CRC cases. PLoS Genet. 2021.01; 17 (1): e1009113. ( PubMed , DOI )

Shunsuke Kimura, Masahiro Sekiguchi, Kentaro Watanabe, Mitsuteru Hiwatarai, Masafumi Seki, Kenichi Yoshida, Tomoya Isobe, Yusuke Shiozawa, Hiromichi Suzuki, Noriko Hoshino, Yasuhide Hayashi, Akira Oka, Satoru Miyano, Seishi Ogawa, Junko Takita: Association of high-risk neuroblastoma classification based on expression profiles with differentiation and metabolism. PLoS One. 2021.01; 16 (1): e0245526. ( PubMed , DOI )

Fumi Nakamura, Honoka Arai, Yasuhito Nannya, Motoshi Ichikawa, Shiho Furuichi, Fusako Nagasawa, Wataru Takahashi, Tomoyuki Handa, Yuko Nakamura, Hiroko Tanaka, Yuka Nakamura, Ko Sasaki, Satoru Miyano, Seishi Ogawa, Kinuko Mitani: Development of Philadelphia chromosome-negative acute myeloid leukemia with IDH2 and NPM1 mutations in a patient with chronic myeloid leukemia who showed a major molecular response to tyrosine kinase inhibitor therapy. Int J Hematol. 2021.01; Online ahead of print (6): 936-940. ( PubMed , DOI )

Lu L, Qin J, Chen J, Wu H, Zhao Q, Miyano S, Zhang Y, Yu H, Li C: DDIT: An Online Predictor for Multiple Clinical Phenotypic Drug-Disease Associations. Frontiers in pharmacology. 2021; 12 772026. ( PubMed , DOI )

Heewon Park, Rui Yamaguchi, Seiya Imoto, Satoru Miyano: Automatic sparse principal component analysis The Canadian J Statistics. 2020.12; Online ahead of print ( DOI )

Felix A Dingler, Meng Wang, Anfeng Mu, Christopher L Millington, Nina Oberbeck, Sam Watcham, Lucas B Pontel, Ashley N Kamimae-Lanning, Frederic Langevin, Camille Nadler, Rebecca L Cordell, Paul S Monks, Rui Yu, Nicola K Wilson, Asuka Hira, Kenichi Yoshida, Minako Mori, Yusuke Okamoto, Yusuke Okuno, Hideki Muramatsu, Yuichi Shiraishi, Masayuki Kobayashi, Toshinori Moriguchi, Tomoo Osumi, Motohiro Kato, Satoru Miyano, Etsuro Ito, Seiji Kojima, Hiromasa Yabe, Miharu Yabe, Keitaro Matsuo, Seishi Ogawa, Berthold Göttgens, Michael R G Hodskinson, Minoru Takata, Ketan J Patel: Two Aldehyde Clearance Systems Are Essential to Prevent Lethal Formaldehyde Accumulation in Mice and Humans. Mol Cell. 2020.12; 80 (6): 996-1012.e9.

Shin-Ei Kudo, Yuta Kouyama, Yushi Ogawa, Katsuro Ichimasa, Tsuyoshi Hamada, Kazuki Kato, Koki Kudo, Takaaki Masuda, Hajime Otsu, Masashi Misawa, Yuichi Mori, Toyoki Kudo, Takemasa Hayashi, Kunihiko Wakamura, Hideyuki Miyachi, Naruhiko Sawada, Toshiro Sato, Tatsuhiro Shibata, Shigeharu Hamatani, Tetsuo Nemoto, Fumio Ishida, Atsushi Niida, Satoru Miyano, Masanobu Oshima, Shuji Ogino, Koshi Mimori: Depressed Colorectal Cancer: A New Paradigm in Early Colorectal Cancer. Clin Transl Gastroenterol. 2020.12; 11 (12): e00269. ( PubMed , DOI )

Takashi Kanamori, Masashi Sanada, Masaki Ri, Hiroo Ueno, Dai Nishijima, Takahiko Yasuda, Takuto Tachita, Tomoko Narita, Shigeru Kusumoto, Atsushi Inagaki, Rei Ishihara, Yuki Murakami, Nobuhiko Kobayashi, Yusuke Shiozawa, Kenichi Yoshida, Masahiro M Nakagawa, Yasuhito Nannya, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Satoru Miyano, Keizo Horibe, Hiroshi Handa, Seishi Ogawa, Shinsuke Iida: Genomic analysis of multiple myeloma using targeted capture sequencing in the Japanese cohort. Br J Haematol. 2020.12; 191 (5): 755-763. ( PubMed , DOI )

Imoto S, Hasegawa T, Yamaguchi R: Data science and precision health care. Nutrition reviews. 2020.12; 78 (12 Suppl 2): 53-57. ( PubMed , DOI )

Felix A Dingler, Meng Wang, Anfeng Mu, Christopher L Millington, Nina Oberbeck, Sam Watcham, Lucas B Pontel, Ashley N Kamimae-Lanning, Frederic Langevin, Camille Nadler, Rebecca L Cordell, Paul S Monks, Rui Yu, Nicola K Wilson, Asuka Hira, Kenichi Yoshida, Minako Mori, Yusuke Okamoto, Yusuke Okuno, Hideki Muramatsu, Yuichi Shiraishi, Masayuki Kobayashi, Toshinori Moriguchi, Tomoo Osumi, Motohiro Kato, Satoru Miyano, Etsuro Ito, Seiji Kojima, Hiromasa Yabe, Miharu Yabe, Keitaro Matsuo, Seishi Ogawa, Berthold Göttgens, Michael R G Hodskinson, Minoru Takata, Ketan J Patel: Two Aldehyde Clearance Systems Are Essential to Prevent Lethal Formaldehyde Accumulation in Mice and Humans. Mol Cell. 2020.12; 80 (6): 996-1012.e9. ( PubMed , DOI )

Heewon Park, Koji Maruhashi, Rui Yamaguchi, Seiya Imoto, Satoru Miyano: Global gene network exploration based on explainable artificial intelligence approach. PLoS One. 2020.11; 15 (11): e0241508. ( PubMed , DOI )

Hiromi Ogura, Shouichi Ohga, Takako Aoki, Taiju Utsugisawa, Hidehiro Takahashi, Asayuki Iwai, Kenichiro Watanabe, Yusuke Okuno, Kenichi Yoshida, Seishi Ogawa, Satoru Miyano, Seiji Kojima, Toshiyuki Yamamoto, Keiko Yamamoto-Shimojima, Hitoshi Kanno: Novel COL4A1 mutations identified in infants with congenital hemolytic anemia in association with brain malformations. Hum Genome Var. 2020.11; 7 (1): 42. ( PubMed , DOI )

Sachiko Ishida, Kumiko Kato, Masami Tanaka, Toshitaka Odamaki, Ryuichi Kubo, Eri Mitsuyama, Jin-Zhong Xiao, Rui Yamaguchi, Satoshi Uematsu, Seiya Imoto, Satoru Miyano: Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota. Commun Biol. 2020.11; 3 (1): 686. ( PubMed , DOI )

Matthew H Bailey, William U Meyerson, Lewis Jonathan Dursi, Liang-Bo Wang, Guanlan Dong, Wen-Wei Liang, Amila Weerasinghe, Shantao Li, Yize Li, Sean Kelso, Gordon Saksena, Kyle Ellrott, Michael C Wendl, David A Wheeler, Gad Getz, Jared T Simpson, Mark B Gerstein, Li Ding, PCAWG Consortium (Satoru Miyano, et al.): Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nat Commun. 2020.11; 11 (1): 6232. ( PubMed , DOI )

Hijikata Y, Yokoyama K, Yokoyama N, Matsubara Y, Shimizu E, Nakashima M, Yamagishi M, Ota Y, Lim LA, Yamaguchi R, Ito M, Tanaka Y, Denda T, Tani K, Yotsuyanagi H, Imoto S, Miyano S, Uchimaru K, Tojo A: Successful Clinical Sequencing by Molecular Tumor Board in an Elderly Patient With Refractory Sézary Syndrome. JCO precision oncology. 2020.11; 4 534-560. ( PubMed , DOI )

Takuya Moriyama, Seiya Imoto, Satoru Miyano, Rui Yamaguchi: Theoretical Foundation of the Performance of Phylogeny-Based Somatic Variant Detection Lecture Note in Bioinformatis. 2020.10; 12508 87-101. ( DOI )

Hiroo Ueno, Kenichi Yoshida, Yusuke Shiozawa, Yasuhito Nannya, Yuka Iijima-Yamashita, Nobutaka Kiyokawa, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Tomoya Isobe, Masafumi Seki, Shunsuke Kimura, Hideki Makishima, Masahiro M Nakagawa, Nobuyuki Kakiuchi, Keisuke Kataoka, Tetsuichi Yoshizato, Dai Nishijima, Takao Deguchi, Kentaro Ohki, Atsushi Sato, Hiroyuki Takahashi, Yoshiko Hashii, Sadao Tokimasa, Junichi Hara, Yoshiyuki Kosaka, Koji Kato, Takeshi Inukai, Junko Takita, Toshihiko Imamura, Satoru Miyano, Atsushi Manabe, Keizo Horibe, Seishi Ogawa, Masashi Sanada: Landscape of driver mutations and their clinical impacts in pediatric B-cell precursor acute lymphoblastic leukemia. Blood Adv. 2020.10; 4 (20): 5165-5173. ( PubMed , DOI )

Yukiko Inagaki-Kawata, Kenichi Yoshida, Nobuko Kawaguchi-Sakita, Masahiro Kawashima, Tomomi Nishimura, Noriko Senda, Yusuke Shiozawa, Yasuhide Takeuchi, Yoshikage Inoue, Aiko Sato-Otsubo, Yoichi Fujii, Yasuhito Nannya, Eiji Suzuki, Masahiro Takada, Hiroko Tanaka, Yuichi Shiraishi, Kenichi Chiba, Yuki Kataoka, Masae Torii, Hiroshi Yoshibayashi, Kazuhiko Yamagami, Ryuji Okamura, Yoshio Moriguchi, Hironori Kato, Shigeru Tsuyuki, Akira Yamauchi, Hirofumi Suwa, Takashi Inamoto, Satoru Miyano, Seishi Ogawa, Masakazu Toi: Genetic and clinical landscape of breast cancers with germline BRCA1/2 variants. Commun Biol. 2020.10; 3 (1): 578. ( PubMed , DOI )

Hidemasa Matsuo, Kenichi Yoshida, Kana Nakatani, Yutarou Harata, Moe Higashitani, Yuri Ito, Yasuhiko Kamikubo, Yusuke Shiozawa, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Ai Okada, Yasuhito Nannya, June Takeda, Hiroo Ueno, Nobutaka Kiyokawa, Daisuke Tomizawa, Takashi Taga, Akio Tawa, Satoru Miyano, Manja Meggendorfer, Claudia Haferlach, Seishi Ogawa, Souichi Adachi: Fusion partner-specific mutation profiles and KRAS mutations as adverse prognostic factors in MLL-rearranged AML. Blood Adv. 2020.10; 4 (19): 4623-4631. ( PubMed , DOI )

Shun Koyamaishi, Takuya Kamio, Akie Kobayashi, Tomohiko Sato, Ko Kudo, Shinya Sasaki, Rika Kanezaki, Daiichiro Hasegawa, Hideki Muramatsu, Yoshiyuki Takahashi, Yoji Sasahara, Hidefumi Hiramatsu, Harumi Kakuda, Miyuki Tanaka, Masataka Ishimura, Masanori Nishi, Akira Ishiguro, Hiromasa Yabe, Takeo Sarashina, Masaki Yamamoto, Yuki Yuza, Nobuyuki Hyakuna, Kenichi Yoshida, Hitoshi Kanno, Shouichi Ohga, Akira Ohara, Seiji Kojima, Satoru Miyano, Seishi Ogawa, Tsutomu Toki, Kiminori Terui, Etsuro Ito: Correction: Reduced-intensity conditioning is effective for hematopoietic stem cell transplantation in young pediatric patients with Diamond-Blackfan anemia. Bone Marrow Transplant. 2020.10; Online ahead of print (5): 1218-1219. ( PubMed , DOI )

奥田 瑠璃花, 南谷 泰仁, 越智 陽太郎, 蝶名林 和久, Creignou Maria, 牧島 秀樹, 竹田 淳恵, 昆 彩奈, 宮野 悟, 半田 寛, 千葉 滋, 大屋敷 一馬, Haferlach Torsten, Lindberg Eva, 小川 誠司: 骨髄異形成症候群におけるder(1;7)の民族的、臨床的、遺伝的特徴(Distinct ethnic, clinical, and genetic characteristics of der(1;7) in myelodysplastic syndromes) 日本癌学会総会記事. 2020.10; 79回 OE7-1. ( ichushi )

Matthew H Bailey, William U Meyerson, Lewis Jonathan Dursi, Liang-Bo Wang, Guanlan Dong, Wen-Wei Liang, Amila Weerasinghe, Shantao Li, Yize Li, Sean Kelso, , , Gordon Saksena, Kyle Ellrott, Michael C Wendl, David A Wheeler, Gad Getz, Jared T Simpson, Mark B Gerstein, Li Ding, : Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nat Commun. 2020.09; 11 (1): 4748. ( PubMed , DOI )

Sato N, Kakuta M, Hasegawa T, Yamaguchi R, Uchino E, Murashita K, Nakaji S, Imoto S, Yanagita M, Okuno Y: Metagenomic profiling of gut microbiome in early chronic kidney disease. Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association. 2020.09; 36 (9): 1675-1684. ( PubMed , DOI )

Hasegawa T, Hayashi S, Shimizu E, Mizuno S, Niida A, Yamaguchi R, Miyano S, Nakagawa H, Imoto S: Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens. Bioinformatics (Oxford, England). 2020.09; 36 (18): 4813-4816. ( PubMed , DOI )

Kosuke Fujimoto, Yasumasa Kimura, Masaki Shimohigoshi, Takeshi Satoh, Shintaro Sato, Georg Tremmel, Miho Uematsu, Yunosuke Kawaguchi, Yuki Usui, Yoshiko Nakano, Tetsuya Hayashi, Koji Kashima, Yoshikazu Yuki, Kiyoshi Yamaguchi, Yoichi Furukawa, Masanori Kakuta, Yutaka Akiyama, Rui Yamaguchi, Sheila E Crowe, Peter B Ernst, Satoru Miyano, Hiroshi Kiyono, Seiya Imoto, Satoshi Uematsu: Metagenome Data on Intestinal Phage-Bacteria Associations Aids the Development of Phage Therapy against Pathobionts. Cell Host Microbe. 2020.09; 28 (3): 380-389.e9. ( PubMed , DOI )

Shun Koyamaishi, Takuya Kamio, Akie Kobayashi, Tomohiko Sato, Ko Kudo, Shinya Sasaki, Rika Kanezaki, Daiichiro Hasegawa, Hideki Muramatsu, Yoshiyuki Takahashi, Yoji Sasahara, Hidefumi Hiramatsu, Harumi Kakuda, Miyuki Tanaka, Masataka Ishimura, Masanori Nishi, Akira Ishiguro, Hiromasa Yabe, Takeo Sarashina, Masaki Yamamoto, Yuki Yuza, Nobuyuki Hyakuna, Kenichi Yoshida, Hitoshi Kanno, Shouichi Ohga, Akira Ohara, Seiji Kojima, Satoru Miyano, Seishi Ogawa, Tsutomu Toki, Kiminori Terui, Etsuro Ito: Reduced-intensity conditioning is effective for hematopoietic stem cell transplantation in young pediatric patients with Diamond-Blackfan anemia. Bone Marrow Transplant. 2020.09; 56 (5): 1013-1020. ( PubMed , DOI )

Yasuo Kubota, Masafumi Seki, Tomoko Kawai, Tomoya Isobe, Misa Yoshida, Masahiro Sekiguchi, Shunsuke Kimura, Kentaro Watanabe, Aiko Sato-Otsubo, Kenichi Yoshida, Hiromichi Suzuki, Keisuke Kataoka, Yoichi Fujii, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Mitsuteru Hiwatari, Akira Oka, Yasuhide Hayashi, Satoru Miyano, Seishi Ogawa, Kenichiro Hata, Yukichi Tanaka, Junko Takita: Comprehensive genetic analysis of pediatric germ cell tumors identifies potential drug targets. Commun Biol. 2020.09; 3 (1): 544. ( PubMed , DOI )

Constance H Li, Stephenie D Prokopec, Ren X Sun, Fouad Yousif, Nathaniel Schmitz, Paul C Boutros, PCAWG Consortium (Satoru Miyano, et al.): Sex differences in oncogenic mutational processes. Nat Commun. 2020.08; 11 (1): 4330. ( PubMed , DOI )

Masahiro Sekiguchi, Masafumi Seki, Tomoko Kawai, Kenichi Yoshida, Misa Yoshida, Tomoya Isobe, Noriko Hoshino, Ryota Shirai, Mio Tanaka, Ryota Souzaki, Kentaro Watanabe, Yuki Arakawa, Yasuhito Nannya, Hiromichi Suzuki, Yoichi Fujii, Keisuke Kataoka, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Teppei Shimamura, Yusuke Sato, Aiko Sato-Otsubo, Shunsuke Kimura, Yasuo Kubota, Mitsuteru Hiwatari, Katsuyoshi Koh, Yasuhide Hayashi, Yutaka Kanamori, Mureo Kasahara, Kenichi Kohashi, Motohiro Kato, Takako Yoshioka, Kimikazu Matsumoto, Akira Oka, Tomoaki Taguchi, Masashi Sanada, Yukichi Tanaka, Satoru Miyano, Kenichiro Hata, Seishi Ogawa, Junko Takita: Integrated multiomics analysis of hepatoblastoma unravels its heterogeneity and provides novel druggable targets. NPJ Precis Oncol. 2020.07; 4 20. ( PubMed , DOI )

Yuki Saito, Junji Koya, Mitsugu Araki, Yasunori Kogure, Sumito Shingaki, Mariko Tabata, Marni B McClure, Kota Yoshifuji, Shigeyuki Matsumoto, Yuta Isaka, Hiroko Tanaka, Takanori Kanai, Satoru Miyano, Yuichi Shiraishi, Yasushi Okuno, Keisuke Kataoka: Landscape and function of multiple mutations within individual oncogenes. Nature. 2020.06; 582 (7810): 95-99. ( PubMed , DOI )

Yotaro Ochi, Ayana Kon, Toyonori Sakata, Masahiro M Nakagawa, Naotaka Nakazawa, Masanori Kakuta, Keisuke Kataoka, Haruhiko Koseki, Manabu Nakayama, Daisuke Morishita, Tatsuaki Tsuruyama, Ryunosuke Saiki, Akinori Yoda, Rurika Okuda, Tetsuichi Yoshizato, Kenichi Yoshida, Yusuke Shiozawa, Yasuhito Nannya, Shinichi Kotani, Yasunori Kogure, Nobuyuki Kakiuchi, Tomomi Nishimura, Hideki Makishima, Luca Malcovati, Akihiko Yokoyama, Kengo Takeuchi, Eiji Sugihara, Taka-Aki Sato, Masashi Sanada, Akifumi Takaori-Kondo, Mario Cazzola, Mineko Kengaku, Satoru Miyano, Katsuhiko Shirahige, Hiroshi I Suzuki, Seishi Ogawa: Combined Cohesin-RUNX1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes. Cancer Discov. 2020.06; 10 (6): 836-853. ( PubMed , DOI )

Munmee Dutta, Hidewaki Nakagawa, Hiroaki Kato, Kazuhiro Maejima, Shota Sasagawa, Kaoru Nakano, Aya Sasaki-Oku, Akihiro Fujimoto, Raúl Nicolás Mateos, Ashwini Patil, Hiroko Tanaka, Satoru Miyano, Takushi Yasuda, Kenta Nakai, Masashi Fujita: Whole genome sequencing analysis identifies recurrent structural alterations in esophageal squamous cell carcinoma. PeerJ. 2020.06; 8 e9294. ( PubMed , DOI )

Isidro Cortés-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang, Dmitry Gordenin, Leszek J Klimczak, Cheng-Zhong Zhang, David S Pellman, Peter J Park, PCAWG Consortium (Satoru Miyano, et al.): Publisher Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nat Genet. 2020.05; Online ahead of print ( PubMed , DOI )

Minako Mori, Asuka Hira, Kenichi Yoshida, Hideki Muramatsu, Yusuke Okuno, Yuichi Shiraishi, Michiko Anmae, Jun Yasuda, Shu Tadaka, Kengo Kinoshita, Tomoo Osumi, Yasushi Noguchi, Souichi Adachi, Ryoji Kobayashi, Hiroshi Kawabata, Kohsuke Imai, Tomohiro Morio, Kazuo Tamura, Akifumi Takaori-Kondo, Masayuki Yamamoto, Satoru Miyano, Seiji Kojima, Etsuro Ito, Seishi Ogawa, Keitaro Matsuo, Hiromasa Yabe, Miharu Yabe, Minoru Takata: Pathogenic mutations identified by a multimodality approach in 117 Japanese Fanconi anemia patients Haematologica. 2020.04; 105 (4): 1166-1167. ( PubMed , DOI )

Misawa K, Hasegawa T, Mishima E, Jutabha P, Ouchi M, Kojima K, Kawai Y, Matsuo M, Anzai N, Nagasaki M: Contribution of Rare Variants of the SLC22A12 Gene to the Missing Heritability of Serum Urate Levels. Genetics. 2020.04; 214 (4): 1079-1090. ( PubMed , DOI )

Shunsuke Kimura, Masafumi Seki, Tomoko Kawai, Hiroaki Goto, Kenichi Yoshida, Tomoya Isobe, Masahiro Sekiguchi, Kentaro Watanabe, Yasuo Kubota, Yasuhito Nannya, Hiroo Ueno, Yusuke Shiozawa, Hiromichi Suzuki, Yuichi Shiraishi, Kentaro Ohki, Motohiro Kato, Katsuyoshi Koh, Ryoji Kobayashi, Takao Deguchi, Yoshiko Hashii, Toshihiko Imamura, Atsushi Sato, Nobutaka Kiyokawa, Atsushi Manabe, Masashi Sanada, Marc R Mansour, Akira Ohara, Keizo Horibe, Masao Kobayashi, Akira Oka, Yasuhide Hayashi, Satoru Miyano, Kenichiro Hata, Seishi Ogawa, Junko Takita: DNA methylation-based classification reveals difference between pediatric T-cell acute lymphoblastic leukemia and normal thymocytes. Leukemia. 2020.04; 34 (4): 1163-1168. ( PubMed , DOI )

Yao-Zhong Zhang, Arda Akdemir, Georg Tremmel, Seiya Imoto, Satoru Miyano, Tetsuo Shibuya, Rui Yamaguchi: Nanopore basecalling from a perspective of instance segmentation. BMC Bioinformatics. 2020.04; 21 (Suppl 3): 136. ( PubMed , DOI )

Fujita M, Yamaguchi R, Hasegawa T, Shimada S, Arihiro K, Hayashi S, Maejima K, Nakano K, Fujimoto A, Ono A, Aikata H, Ueno M, Hayami S, Tanaka H, Miyano S, Yamaue H, Chayama K, Kakimi K, Tanaka S, Imoto S, Nakagawa H: Classification of primary liver cancer with immunosuppression mechanisms and correlation with genomic alterations. EBioMedicine. 2020.03; 53 102659. ( PubMed , DOI )

Sato N, Kakuta M, Hasegawa T, Yamaguchi R, Uchino E, Kobayashi W, Sawada K, Tamura Y, Tokuda I, Murashita K, Nakaji S, Imoto S, Yanagita M, Okuno Y: Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers. NPJ biofilms and microbiomes. 2020.03; 6 (1): 11. ( PubMed , DOI )

Isidro Cortés-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang, Dmitry Gordenin, Leszek J Klimczak, Cheng-Zhong Zhang, David S Pellman, Peter J Park, PCAWG Consortium (Satoru Miyano, et al.): Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nat Genet. 2020.03; 52 (3): 331-341. ( PubMed , DOI )

Kadir C Akdemir, Victoria T Le, Sahaana Chandran, Yilong Li, Roel G Verhaak, Rameen Beroukhim, Peter J Campbell, Lynda Chin, Jesse R Dixon, P Andrew Futreal, ,PCAWG Consortium (Satoru Miyano, et al.): Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer. Nat Genet. 2020.03; 52 (3): 294-305. ( PubMed , DOI )

Bernardo Rodriguez-Martin, Eva G Alvarez, Adrian Baez-Ortega, Jorge Zamora, Fran Supek, Jonas Demeulemeester, Martin Santamarina, Young Seok Ju, Javier Temes, Daniel Garcia-Souto, Harald Detering, Yilong Li, Jorge Rodriguez-Castro, Ana Dueso-Barroso, Alicia L Bruzos, Stefan C Dentro, Miguel G Blanco, Gianmarco Contino, Daniel Ardeljan, Marta Tojo, Nicola D Roberts, Sonia Zumalave, Paul A W Edwards, Joachim Weischenfeldt, Montserrat Puiggròs, Zechen Chong, Ken Chen, Eunjung Alice Lee, Jeremiah A Wala, Keiran Raine, Adam Butler, Sebastian M Waszak, Fabio C P Navarro, Steven E Schumacher, Jean Monlong, Francesco Maura, Niccolo Bolli, Guillaume Bourque, Mark Gerstein, Peter J Park, David C Wedge, Rameen Beroukhim, David Torrents, Jan O Korbel, Inigo Martincorena, Rebecca C Fitzgerald, Peter Van Loo, Haig H Kazazian, Kathleen H Burns, Peter J Campbell, Jose M C Tubio, PCAWG Consortium (Satoru Miyano, et al.): Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nat Genet. 2020.03; 52 (3): 306-319. ( PubMed , DOI )

Sergei Yakneen, Sebastian M Waszak, , Michael Gertz, Jan O Korbel, PCAWG Consortium (Satoru Miyano, et al.): Butler enables rapid cloud-based analysis of thousands of human genomes. Nat Biotechnol. 2020.03; 38 (3): 288-292. ( PubMed , DOI )

Takanori Hasegawa, Rui Yamaguchi, Atsushi Niida, Satoru Miyano, Seiya Imoto: Ensemble smoothers for inference of hidden states and parameters in combinatorial regulatory model J Frankl Inst. 2020.03; 357 (5): 2916-2933. ( DOI )

Akihiro Fujimoto, Masashi Fujita, Takanori Hasegawa, Jing Hao Wong, Kazuhiro Maejima, Aya Oku-Sasaki, Kaoru Nakano, Yuichi Shiraishi, Satoru Miyano, Go Yamamoto, Kiwamu Akagi, Seiya Imoto, Hidewaki Nakagawa: Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types. Genome Res. 2020.03; 30 (3): 334-346. ( PubMed , DOI )

Ayako Maeda-Minami, Tetsuhiro Yoshino, Kotoe Katayama, Yuko Horiba, Hiroaki Hikiami, Yutaka Shimada, Takao Namiki, Eiichi Tahara, Kiyoshi Minamizawa, Shinichi Muramatsu, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Hideki Mima, Masaru Mimura, Tomonori Nakamura, Kenji Watanabe: Discrimination of prediction models between cold-heat and deficiency-excess patterns. Complement Ther Med. 2020.03; 49 102353. ( PubMed , DOI )

Raksha Shrestha, Mamiko Sakata-Yanagimoto, Koichiro Maie, Motohiko Oshima, Masatomo Ishihara, Yasuhito Suehara, Kota Fukumoto, Yaeko Nakajima-Takagi, Hirotaka Matsui, Takayasu Kato, Hideharu Muto, Tatsuhiro Sakamoto, Manabu Kusakabe, Yasuhito Nannya, Hideki Makishima, Hiroo Ueno, Ryunosuke Saiki, Seishi Ogawa, Kenichi Chiba, Yuichi Shiraishi, Satoru Miyano, Enguerran Mouly, Olivier A Bernard, Toshiya Inaba, Haruhiko Koseki, Atsushi Iwama, Shigeru Chiba: Molecular pathogenesis of progression to myeloid leukemia from TET-insufficient status. Blood Adv. 2020.03; 4 (5): 845-854. ( PubMed , DOI )

Rika Kasajima, Rui Yamaguchi, Eigo Shimizu, Yoshinori Tamada, Atsushi Niida, George Tremmel, Takeshi Kishida, Ichiro Aoki, Seiya Imoto, Satoru Miyano, Hiroji Uemura, Yohei Miyagi: Variant analysis of prostate cancer in Japanese patients and a new attempt to predict related biological pathways Oncol Rep. 2020.03; 43 (3): 943-952. ( PubMed , DOI )

Sergei Yakneen, Sebastian M Waszak, Michael Gertz, Jan O Korbel, PCAWG Consortium (Satoru Miyano, et al.): Publisher Correction: Butler enables rapid cloud-based analysis of thousands of human genomes. Nat Biotechnol. 2020.02; Online ahead of print. ( PubMed , DOI )

Yiqun Zhang, Fengju Chen, Nuno A Fonseca, Yao He, Masashi Fujita, Hidewaki Nakagawa, Zemin Zhang, Alvis Brazma, Chad J Creighton, PCAWG Consortium (Satoru Miyano, et al.): High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations. Nat Commun. 2020.02; 11 (1): 736. ( PubMed , DOI )

Lina Sieverling, Chen Hong, Sandra D Koser, Philip Ginsbach, Kortine Kleinheinz, Barbara Hutter, Delia M Braun, Isidro Cortés-Ciriano, Ruibin Xi, Rolf Kabbe, Peter J Park, Roland Eils, Matthias Schlesner, , Benedikt Brors, Karsten Rippe, David T W Jones, Lars Feuerbach, PCAWG Consortium (Satoru Miyano, et al.): Genomic footprints of activated telomere maintenance mechanisms in cancer. Nat Commun. 2020.02; 11 (1): 733. ( PubMed , DOI )

Makoto Hirata, Naofumi Asano, Kotoe Katayama, Akihiko Yoshida, Yusuke Tsuda, Masaya Sekimizu, Sachiyo Mitani, Eisuke Kobayashi, Motokiyo Komiyama, Hiroyuki Fujimoto, Takahiro Goto, Yukihide Iwamoto, Norifumi Naka, Shintaro Iwata, Yoshihiro Nishida, Toru Hiruma, Hiroaki Hiraga, Hirotaka Kawano, Toru Motoi, Yoshinao Oda, Daisuke Matsubara, Masashi Fujita, Tatsuhiro Shibata, Hidewaki Nakagawa, Robert Nakayama, Tadashi Kondo, Seiya Imoto, Satoru Miyano, Akira Kawai, Rui Yamaguchi, Hitoshi Ichikawa, Koichi Matsuda: Publisher Correction: Integrated exome and RNA sequencing of dedifferentiated liposarcoma. Nat Commun. 2020.02; 11 (1): 1024. ( PubMed , DOI )

Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah A Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E Maruvka, Ciyue Shen, Samirkumar B Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A Fonseca, Abel Gonzalez-Perez, Qianyun Guo, Mark P Hamilton, Nicholas J Haradhvala, Chen Hong, Keren Isaev, Todd A Johnson, Malene Juul, Andre Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D Roberts, Gordon Saksena, Steven E Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M C Tubio, Husen M Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J Raphael, Mark A Rubin, Chris Sander, Lincoln D Stein, Joshua M Stuart, Tatsuhiko Tsunoda, David A Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J Campbell, Núria López-Bigas, Joachim Weischenfeldt, Rameen Beroukhim, Iñigo Martincorena, Jakob Skou Pedersen, Gad Getz, PCAWG Consortium. PCAWG Consortium (Satoru Miyano, et al.): Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nature. 2020.02; 578 (7793): 102-111. ( PubMed , DOI )

Yilong Li, Nicola D Roberts, Jeremiah A Wala, Ofer Shapira, Steven E Schumacher, Kiran Kumar, Ekta Khurana, Sebastian Waszak, Jan O Korbel, James E Haber, Marcin Imielinski, , Joachim Weischenfeldt, Rameen Beroukhim, Peter J Campbell, PCAWG Consortium (Satoru Miyano, et al.): Patterns of somatic structural variation in human cancer genomes. Nature. 2020.02; 578 (7793): 112-121. ( PubMed , DOI )

Pan-cancer analysis of whole genomes. Nature. 2020.02; 578 (7793): 82-93. ( PubMed , DOI )

Nobuyuki Kakiuchi, Kenichi Yoshida, Motoi Uchino, Takako Kihara, Kotaro Akaki, Yoshikage Inoue, Kenji Kawada, Satoshi Nagayama, Akira Yokoyama, Shuji Yamamoto, Minoru Matsuura, Takahiro Horimatsu, Tomonori Hirano, Norihiro Goto, Yasuhide Takeuchi, Yotaro Ochi, Yusuke Shiozawa, Yasunori Kogure, Yosaku Watatani, Yoichi Fujii, Soo Ki Kim, Ayana Kon, Keisuke Kataoka, Tetsuichi Yoshizato, Masahiro M Nakagawa, Akinori Yoda, Yasuhito Nanya, Hideki Makishima, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Masashi Sanada, Eiji Sugihara, Taka-Aki Sato, Takashi Maruyama, Hiroyuki Miyoshi, Makoto Mark Taketo, Jun Oishi, Ryosaku Inagaki, Yutaka Ueda, Shinya Okamoto, Hideaki Okajima, Yoshiharu Sakai, Takaki Sakurai, Hironori Haga, Seiichi Hirota, Hiroki Ikeuchi, Hiroshi Nakase, Hiroyuki Marusawa, Tsutomu Chiba, Osamu Takeuchi, Satoru Miyano, Hiroshi Seno, Seishi Ogawa: Frequent mutations that converge on the NFKBIZ pathway in ulcerative colitis. Nature. 2020.01; 577 (7789): 260-265. ( PubMed , DOI )

Masataka Taguchi, Hiroyuki Mishima, Yusuke Shiozawa, Chisa Hayashida, Akira Kinoshita, Yasuhito Nannya, Hideki Makishima, Makiko Horai, Masatoshi Matsuo, Shinya Sato, Hidehiro Itonaga, Takeharu Kato, Hiroaki Taniguchi, Daisuke Imanishi, Yoshitaka Imaizumi, Tomoko Hata, Motoi Takenaka, Yukiyoshi Moriuchi, Yuichi Shiraishi, Satoru Miyano, Seishi Ogawa, Koh-Ichiro Yoshiura, Yasushi Miyazaki: Genome analysis of myelodysplastic syndromes among atomic bomb survivors in Nagasaki. Haematologica. 2020.01; 105 (2): 358-365. ( PubMed , DOI )

Noriaki Sato, Masanori Kakuta, Eiichiro Uchino, Takanori Hasegawa, Ryosuke Kojima, Wataru Kobayashi, Kaori Sawada, Yoshihiro Tamura, Itoyo Tokuda, Seiya Imoto, Shigeyuki Nakaji, Koichi Murashita, Motoko Yanagita, Yasushi Okuno: The relationship between cigarette smoking and the tongue microbiome in an East Asian population. J Oral Microbiol. 2020; 12 (1): 1742527. ( PubMed , DOI )

Hasegawa Takanori, Yamaguchi Rui, Niida Atsushi, Miyano Satoru, Imoto Seiya: Ensemble smoothers for inference of hidden states and parameters in combinatorial regulatory model. JOURNAL OF THE FRANKLIN INSTITUTE-ENGINEERING AND APPLIED MATHEMATICS. 2020; 357 (5): 2916-2933. ( DOI )

Takanori Hasegawa, Rui Yamaguchi, Masanori Kakuta, Kaori Sawada, Kenichi Kawatani, Koichi Murashita, Shigeyuki Nakaji, Seiya Imoto: Prediction of blood test values under different lifestyle scenarios using time-series electronic health record. PLoS One. 2020; 15 (3): e0230172. ( PubMed , DOI )

Atsushi Niida, Takanori Hasegawa, Hideki Innan, Tatsuhiro Shibata, Koshi Mimori, Satoru Miyano: A unified simulation model for understanding the diversity of cancer evolution. PeerJ. 2020; 8 (4): e8842. ( PubMed , DOI )

Tomoko Saito, Atsushi Niida, Ryutaro Uchi, Hidenari Hirata, Hisateru Komatsu, Shotaro Sakimura, Shuto Hayashi, Sho Nambara, Yosuke Kuroda, Shuhei Ito, Hidetoshi Eguchi, Takaaki Masuda, Keishi Sugimachi, Taro Tobo, Haruto Nishida, Tsutomu Daa, Kenichi Chiba, Yuichi Shiraishi, Tetsuichi Yoshizato, Masaaki Kodama, Tadayoshi Okimoto, Kazuhiro Mizukami, Ryo Ogawa, Kazuhisa Okamoto, Mitsutaka Shuto, Kensuke Fukuda, Yusuke Matsui, Teppei Shimamura, Takanori Hasegawa, Yuichiro Doki, Satoshi Nagayama, Kazutaka Yamada, Mamoru Kato, Tatsuhiro Shibata, Masaki Mori, Hiroyuki Aburatani, Kazunari Murakami, Yutaka Suzuki, Seishi Ogawa, Satoru Miyano, Koshi Mimori: A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer. Nat Commun. 2020; 9 (1): 2884. ( PubMed , DOI )

Sunao Shimizu, Junsei Mimura, Takanori Hasegawa, Eigo Shimizu, Seiya Imoto, Michiko Tsushima, Shuya Kasai, Hiromi Yamazaki, Yusuke Ushida, Hiroyuki Suganuma, Hirofumi Tomita, Masayuki Yamamoto, Shigeyuki Nakaji, Ken Itoh: Association of single nucleotide polymorphisms in the NRF2 promoter with vascular stiffness with aging. PLoS One. 2020; 15 (8): e0236834. ( PubMed , DOI )

Nishimura A, Hirabayashi S, Hasegawa D, Yoshida K, Shiraishi Y, Ashiarai M, Hosoya Y, Fujiwara T, Harigae H, Miyano S, Ogawa S, Manabe A: Acquisition of monosomy 7 and a RUNX1 mutation in Pearson syndrome Pediatric Blood and Cancer. 2020; 68 (2): e28799. ( PubMed , DOI )

A Bayesian model integration for mutation calling through data partitioning 2019.03; 35 (21): 4247-4254. ( PubMed , DOI )

Atsushi Niida, Takanori Hasegawa, Satoru Miyano: Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization. PLoS One. 2019; 14 (3): e0210678. ( PubMed , DOI )

Comprehensive Search for Prognostic Biomarkers using PCAWG Data 2018.12; 109 291.

Masashi Fujita, Seiya Imoto, Rui Yamaguchi, Takanori Hasegawa, Shuto Hayashi, Kazuhiro Kakimi, Satoru Miyano, Hiroki Yamaue, Kazuaki Chayama, Hidewaki Nakagawa: Genomic insights into immune suppression in liver cancer CANCER SCIENCE. 2018.12; 109 640.

Immuno-genomic subtype of liver cancer correlates with mechanisms of immune suppression and prognosis 2018.03; 12

Masashi Fujita, Seiya Imoto, Rui Yamaguchi, Takanori Hasegawa, Shuto Hayashi, Satoru Miyano, Hiroki Yamaue, Kazuaki Chayama, Hidewaki Nakagawa: Immuno-genomic subtype of liver cancer correlates with mechanisms of immune suppression and prognosis HUMAN GENOMICS. 2018.03; 12

Takanori Hasegawa, Kaname Kojima, Yosuke Kawai, Masao Nagasaki: Time-Series Filtering for Replicated Observations via a Kernel Approximate Bayesian Computation IEEE Trans. Signal Process. 2018; 66 (23): 6148-6161.

Tomohiro Morita, Abidur Rahman, Takanori Hasegawa, Akihiko Ozaki, Tetsuya Tanimoto: The Potential Possibility of Symptom Checker. Int J Health Policy Manag. 2017.10; 6 (10): 615-616. ( PubMed , DOI )

Takanori Hasegawa, Kaname Kojima, Yosuke Kawai, Kazuharu Misawa, Takahiro Mimori, Masao Nagasaki: AP-SKAT: highly-efficient genome-wide rare variant association test. BMC Genomics. 2016.09; 17 (1): 745. ( PubMed , DOI )

Seizo Koshiba, Ikuko Motoike, Kaname Kojima, Takanori Hasegawa, Matsuyuki Shirota, Tomo Saito, Daisuke Saigusa, Inaho Danjoh, Fumiki Katsuoka, Soichi Ogishima, Yosuke Kawai, Yumi Yamaguchi-Kabata, Miyuki Sakurai, Sachiko Hirano, Junichi Nakata, Hozumi Motohashi, Atsushi Hozawa, Shinichi Kuriyama, Naoko Minegishi, Masao Nagasaki, Takako Takai-Igarashi, Nobuo Fuse, Hideyasu Kiyomoto, Junichi Sugawara, Yoichi Suzuki, Shigeo Kure, Nobuo Yaegashi, Osamu Tanabe, Kengo Kinoshita, Jun Yasuda, Masayuki Yamamoto: The structural origin of metabolic quantitative diversity. Sci Rep. 2016.08; 6 31463. ( PubMed , DOI )

Kojima K, Kawai Y, Nariai N, Mimori T, Hasegawa T, Nagasaki M: Short tandem repeat number estimation from paired-end reads for multiple individuals by considering coalescent tree. BMC genomics. 2016.08; 17 Suppl 5 494. ( PubMed , DOI )

Junji Kurashige, Takanori Hasegawa, Atsushi Niida, Keishi Sugimachi, Niantao Deng, Kosuke Mima, Ryutaro Uchi, Genta Sawada, Yusuke Takahashi, Hidetoshi Eguchi, Masashi Inomata, Seigo Kitano, Takeo Fukagawa, Mitsuru Sasako, Hiroki Sasaki, Shin Sasaki, Masaki Mori, Kazuyoshi Yanagihara, Hideo Baba, Satoru Miyano, Patrick Tan, Koshi Mimori: Integrated Molecular Profiling of Human Gastric Cancer Identifies DDR2 as a Potential Regulator of Peritoneal Dissemination. Sci Rep. 2016.03; 6 22371. ( PubMed , DOI )

Hasegawa Takanori, Niida Atsushi, Mori Tomoya, Shimamura Teppei, Yamaguchi Rui, Miyano Satoru, Akutsu Tatsuya, Imoto Seiya: A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models COMPUTATIONAL STATISTICS & DATA ANALYSIS. 2016.02; 94 63-74. ( DOI )

Emi Ayada, Takanori Hasegawa, Atsushi Niida, Satoru Miyano, Seiya Imoto: Binary contingency table method for analysing gene mutation in cancer genome 2016; 12 (3): 211-226.

T. Hasegawa, S. Hayashi, E. Shimizu, S. Mizuno, R. Yamaguchi, S. Miyano, H. Nakagawa, S. Imoto: An in silico automated pipeline to identify tumor specic neoantigens from whole genome and exome sequencing data Proceeding of 12th International Symposium on Bioinformatics Research and Applications. 2016;

Emi Ayada, Atsushi Niida, Takanori Hasegawa, Satoru Miyano, Seiya Imoto: Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome BIOINFORMATICS RESEARCH AND APPLICATIONS (ISBRA 2015). 2015.06; 9096 12-23.

Hasegawa T, Mori T, Yamaguchi R, Shimamura T, Miyano S, Imoto S, Akutsu T: Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks. BMC systems biology. 2015.03; 9 14. ( PubMed , DOI )

Kaname Kojima, Yosuke Kawai, Naoki Nariai, Takahiro Mimori, Takanori Hasegawa, Masao Nagasaki: Short Tandem Repeat Number Estimation from Paired-end Sequence Reads by Considering Unobserved Genealogy of Multiple Individuals BIOINFORMATICS RESEARCH AND APPLICATIONS. 2015; 9096 422-423.

Hasegawa T, Mori T, Yamaguchi R, Imoto S, Miyano S, Akutsu T: An efficient data assimilation schema for restoration and extension of gene regulatory networks using time-course observation data. Journal of computational biology : a journal of computational molecular cell biology. 2014.11; 21 (11): 785-98. ( PubMed , DOI )

Hasegawa T, Nagasaki M, Yamaguchi R, Imoto S, Miyano S: An efficient method of exploring simulation models by assimilating literature and biological observational data. Bio Systems. 2014.07; 121 54-66. ( PubMed , DOI )

Hasegawa T, Yamaguchi R, Nagasaki M, Miyano S, Imoto S: Inference of gene regulatory networks incorporating multi-source biological knowledge via a state space model with L1 regularization. PloS one. 2014; 9 (8): e105942. ( PubMed , DOI )

Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano: Poster: Comprehensive pharmacogenomic pathway screening by data assimilation IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences(ICCABS). 2011.02; 246.

Hasegawa, T; Yamaguchi, R; Nagasaki, M; Imoto, S; Miyano, S: Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation BIOINFORMATICS RESEARCH AND APPLICATIONS. 2011; 6674 160-171.

Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano: Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation BIOINFORMATICS RESEARCH AND APPLICATIONS. 2011; 6674 160-171.

佐伯 龍之介, 枝廣 龍哉, 曽根原 究人, 王 青波, 南宮 湖, 長谷川 嵩矩, 南谷 泰仁, 白石 友一, 木村 彰方, 井元 清哉, 宮野 悟, 金井 隆典, 福永 興壱, 岡田 随象, 小川 誠司: クローン性造血が新型コロナ感染症の重症化リスクに与える影響(The impact of clonal hematopoiesis on the risk of severe COVID-19) 日本癌学会総会記事. 2023.09; 82回 1761. ( ichushi )

内御堂亮, 長谷川嵩矩, 若林健二: Longitudinal data analysis for predicting mortality in patients with severe COVID-19 日本集中治療医学会学術集会(Web). 2022.03; 49th

Soichiro Susuki, Satoshi Ito, Kenichiro Sakai, Yue Inada, Ikuo Miyoshi, Yutaka Ishikawa, Satoru Miyano: Optimizationa and performance evaluation of whole genome sequence data analysis program Genomon on supercomputer FUGAKU High-Performance Computing of Informationn Processing Society of Japan. 2021.03; 2021-HPC-178 (18): 1-9.

Heewon Park, Koji Maruhashi, Rui Yamaguchi, Satoru Miyano: "Launch of new data-driven science": Realization of personal genome medicine/prevention by explainable AI Igakuno Ayumi. 2021.02; 276 (9): 849-853. ( ichushi )

三森功士, 長山聡, 長谷川嵩矩, 新井田厚司, 小林雄太, 小林雄太, 増田隆明, 鈴木穣, 柴田龍弘: Evolution for fostering metastatic sites and the traits of detectable mutations in ctDNA in CRC 日本がん転移学会学術集会・総会プログラム抄録集. 2021; 30th

Satoru Miyano: Genome Revolution-Preventive and Medical Innovation: Footprints of the Genome Revolution and the Near Future of Prevention and Medical Care The Journal of Public Health Practice. 2020.04; 84 (4): 214-219. ( ichushi )

Takanori Hasegawa, Kaname Kojima, Yosuke Kawai, Masao Nagasaki: Time-Series Filtering for Replicated Observations via a Kernel Approximate Bayesian Computation. IEEE Trans. Signal Process.. 2018.12; 66 (23): 6148-6161. ( DOI )

加藤 護, 永井 桃子, 長谷川 嵩矩, 井元 清哉, 松井 茂之, 角田 達彦, 柴田 龍弘: PCAWGデータを用いた予後バイオマーカーの網羅的探索(Comprehensive Search for Prognostic Biomarkers using PCAWG Data) 日本癌学会総会記事. 2018.09; 77回 358. ( ichushi )

藤田 征志, 井元 清哉, 山口 類, 長谷川 嵩矩, 林 周斗, 垣見 和宏, 宮野 悟, 山上 裕機, 茶山 一彰, 中川 英刀: 肝臓がんにおける免疫抑制機構のゲノム解析(Genomic insights into immune suppression in liver cancer) 日本癌学会総会記事. 2018.09; 77回 906. ( ichushi )

朝田瑞穂, 朝田瑞穂, 長谷川嵩矩, 神山圭, 金森眸, 山本寛人, 内田篤治郎: Deep learning-based prediction model for intraoperative neuromuscular blockade 日本麻酔科学会学術集会(Web). 2023.06; 70th

Shuto Hayashi, Takuya Moriyama, Rui Yamaguchi, Shinichi Mizuno, Mitsuhiro Komura, Satoru Miyano, Hidewaki Nakagawa, Seiya Imoto: ALPHLARD-NT: Bayesian Method for Human Leukocyte Antigen Genotyping and Mutation Calling through Simultaneous Analysis of Normal and Tumor Whole-Genome Sequence Data Journal of Computational Biology. 2019.09; 26 (9): 923-937. ( DOI )

Shuto Hayashi, Rui Yamaguchi, Shinichi Mizuno, Mitsuhiro Komura, Satoru Miyano, Hidewaki Nakagawa, Seiya Imoto: ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data BMC Genomics. 2018.11; 19 (1): ( DOI )