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Maiko Noguchi-Watanabe, Takako Ishikawa, Kasumi Ikuta, Miya Aishima, Sayuri Nonaka, Kunihiko Takahashi, Tatsuhiko Anzai, Sakiko Fukui: Physical function decline predictors in nursing home residents using new national quality indicators. Geriatr Gerontol Int. 2024.01; 24 (1): 123-132. ( PubMed , DOI )

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Tomomi Sakano, Tatsuhiko Anzai, Kunihiko Takahashi, Sakiko Fukui: Impact of home-visit nursing service use on costs in the last 3 months of life among older adults: A retrospective cohort study. J Nurs Scholarsh. 2024.01; 56 (1): 191-201. ( PubMed , DOI )

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Miya Aishima, Takako Ishikawa, Kasumi Ikuta, Maiko Noguchi-Watanabe, Sayuri Nonaka, Kunihiko Takahashi, Tatsuhiko Anzai, Sakiko Fukui: Unplanned Hospital Visits and Poor Oral Health With Undernutrition in Nursing Home Residents. J Am Med Dir Assoc. 2023.12; 24 (12): 1855-1860.e1. ( PubMed , DOI )

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Masatoshi Takagi, Akihiro Hoshino, Kristine Bousset, Jule Röddecke, Hanna Luisa Martin, Iulia Folcut, Dan Tomomasa, Xi Yang, Junya Kobayashi, Naoki Sakata, Kenichi Yoshida, Satoru Miyano, Seishi Ogawa, Seiji Kojima, Tomohiro Morio, Thilo Dörk, Hirokazu Kanegane: Bone Marrow Failure and Immunodeficiency Associated with Human RAD50 Variants. J Clin Immunol. 2023.11; 43 (8): 2136-2145. ( PubMed , DOI )

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Tanaka H, Maetani T, Chubachi S, Tanabe N, Shiraishi Y, Asakura T, Namkoong H, Shimada T, Azekawa S, Otake S, Nakagawara K, Fukushima T, Watase M, Terai H, Sasaki M, Ueda S, Kato Y, Harada N, Suzuki S, Yoshida S, Tateno H, Yamada Y, Jinzaki M, Hirai T, Okada Y, Koike R, Ishii M, Hasegawa N, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K: Clinical utilization of artificial intelligence-based COVID-19 pneumonia quantification using chest computed tomography - a multicenter retrospective cohort study in Japan. Respiratory research. 2023.10; 24 (1): 241. ( PubMed , DOI )

Hirofumi Aso, Jumpei Ito, Haruka Ozaki, Yukie Kashima, Yutaka Suzuki, Yoshio Koyanagi, Kei Sato: Single-cell transcriptome analysis illuminating the characteristics of species-specific innate immune responses against viral infections. GigaScience. 2023.10; 12 giad086. ( PubMed , DOI )

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Haruki Ideguchi, Diptarama Hendrian, Ryo Yoshinaka, Ayumi Shinohara: Efficient Parameterized Pattern Matching in Sublinear Space Proceedings of the 30th International Symposium on String Processing and Information Retrieval (SPIRE 2023). 2023.09; 271-283. ( DOI )

Kouta Okabe, Takuya Mieno, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai: Linear-Time Computation of Generalized Minimal Absent Words for Multiple Strings Proc. 30th International Symposium on String Processing and Information Retrieval (SPIRE 2023). 2023.09; 14240 331-344. ( DOI )

Hideo Bannai, Jonas Eller: Lyndon Arrays in Sublinear Time Proc. 31st Annual European Symposium on Algorithms (ESA 2023). 2023.09; 274 14:1-14:16. ( DOI )

Aaron Hong, Marco Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie: Acceleration of FM-Index Queries Through Prefix-Free Parsing Proc. 23rd International Workshop on Algorithms in Bioinformatics (WABI 2023). 2023.09; 273 13:1-13:16. ( DOI )

Funasaki S, Hatano A, Nakatsumi H, Koga D, Sugahara O, Yumimoto K, Baba M, Matsumoto M, Nakayama KI: A stepwise and digital pattern of RSK phosphorylation determines the outcome of thymic selection. iScience. 2023.09; 26 (9): 107552. ( PubMed , DOI )

Tanaka Y, Yamagishi M, Motomura Y, Kamatani T, Oguchi Y, Suzuki N, Kiniwa T, Kabata H, Irie M, Tsunoda T, Miya F, Goda K, Ohara O, Funatsu T, Fukunaga K, Moro K, Uemura S, Shirasaki Y: Time-dependent cell-state selection identifies transiently expressed genes regulating ILC2 activation. Communications biology. 2023.09; 6 (1): 915. ( PubMed , DOI )

Yuki Nishida, Tatsuhiko Anzai, Kunihiko Takahashi, Takahide Kozuma, Eiichiro Kanda, Keita Yamauchi, Fuminori Katsukawa: Multimorbidity patterns in the working age population with the top 10% medical cost from exhaustive insurance claims data of Japan Health Insurance Association. PLoS One. 2023.09; 18 (9): e0291554. ( PubMed , DOI )

COVID-19 Host Genetics Initiative: A second update on mapping the human genetic architecture of COVID-19. Nature. 2023.09; 621 (7977): E7-E26. ( PubMed , DOI )

Hiroyuki Inose, Takuya Takahashi, Yu Matsukura, Jun Hashimoto, Kurando Utagawa, Satoru Egawa, Kentaro Yamada, Takashi Hirai, Kunihiko Takahashi, Toshitaka Yoshii: Effect of vitamin D deficiency on surgical outcomes of degenerative cervical myelopathy. N Am Spine Soc J. 2023.09; 15 100239. ( PubMed , DOI )

Yuta Fujishige, Yuki Tsujimaru, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Linear-time computation of DAWGs, symmetric indexing structures, and MAWs for integer alphabets Theoretical Computer Science. 2023.09; 973 114093. ( DOI )

Kodama M, Toyokawa G, (20名省略), Bamba T, Shimizu H, Yoshizumi T, Nakayama KI: Modulation of host glutamine anabolism enhances the sensitivity of small cell lung cancer to chemotherapy Cell Reports. 2023.08; 42 (8): 112899.

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Bannai Hideo, Tomohiro I, Koeppl Dominik: Longest bordered and periodic subsequences INFORMATION PROCESSING LETTERS. 2023.08; 182 ( DOI )

Tsubasa Ito, Takahiro Otani, Tatsuhiko Anzai, Takashi Okumura, Kunihiko Takahashi: Potential Biases of the Transmission Risks of COVID-19 estimated by Contact Tracing Surveys in Japan. Epidemiology, Biostatistics, and Public Health. 2023.08; 18 (1): 31-37. ( DOI )

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Suzuki M, Kasajima R, Yokose T, Shimizu E, Hatakeyama S, Yamaguchi K, Yokoyama K, Katayama K, Yamaguchi R, Furukawa Y, Miyano S, Imoto S, Shinozaki-Ushiku A, Ushiku T, Miyagi Y: KMT2C expression and DNA homologous recombination repair factors in lung cancers with a high-grade fetal adenocarcinoma component. Translational lung cancer research. 2023.08; 12 (8): 1738-1751. ( PubMed , DOI )

Yutaro Numaya, Diptarama Hendrian, Ryo Yoshinaka, Ayumi Shinohara: Identification of Substitutable Context-Free Languages over Infinite Alphabets from Positive Data Proceedings of the 16th International Conference on Grammatical Inference (ICGI 2023). 2023.07; 23-34.

Tanaka H, Chubachi S, Asakura T, Namkoong H, Azekawa S, Otake S, Nakagawara K, Fukushima T, Lee H, Watase M, Sakurai K, Kusumoto T, Masaki K, Kamata H, Ishii M, Hasegawa N, Okada Y, Koike R, Kitagawa Y, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K: Characteristics and clinical effectiveness of COVID-19 vaccination in hospitalized patients in Omicron-dominated epidemic wave - a nationwide study in Japan. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases. 2023.07; 132 84-88. ( PubMed , DOI )

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Tanaka H, Chubachi S, Namkoong H, Sato Y, Asakura T, Lee H, Azekawa S, Otake S, Nakagawara K, Fukushima T, Watase M, Sakurai K, Kusumoto T, Kondo Y, Masaki K, Kamata H, Ishii M, Kaneko Y, Hasegawa N, Ueda S, Sasaki M, Izumo T, Inomata M, Miyazawa N, Kimura Y, Suzuki Y, Harada N, Ichikawa M, Takata T, Ishikura H, Yoshiyama T, Kokuto H, Murakami K, Sano H, Ueda T, Kuwahara N, Fujiwara A, Ogura T, Inoue T, Asami T, Mutoh Y, Nakachi I, Baba R, Nishi K, Tani M, Kagyo J, Hashiguchi M, Oguma T, Asano K, Nishikawa M, Watanabe H, Okada Y, Koike R, Kitagawa Y, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K: Propensity-Score Matched Analysis of the Effectiveness of Baricitinib in Patients With Coronavirus Disease 2019 (COVID-19) Using Nationwide Real-World Data: An Observational Matched Cohort Study From the Japan COVID-19 Task Force. Open forum infectious diseases. 2023.07; 10 (7): ofad311. ( PubMed , DOI )

Ozawa T, Asakura T, Chubachi S, Namkoong H, Tanaka H, Lee K, Fukushima T, Otake S, Nakagawara K, Watase M, Masaki K, Kamata H, Ishii M, Hasegawa N, Harada N, Ueda T, Ueda S, Ishiguro T, Arimura K, Saito F, Yoshiyama T, Nakano Y, Mutoh Y, Suzuki Y, Edahiro R, Murakami K, Okada Y, Koike R, Kitagawa Y, Tokunaga K, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K, Japan COVID-19 Task Force: Use of the neutrophil-to-lymphocyte ratio and an oxygen requirement to predict disease severity in patients with COVID-19. Respiratory investigation. 2023.07; 61 (4): 454-459. ( PubMed , DOI )

Hiroyuki Inose, Tsuyoshi Kato, Yu Matsukura, Takashi Hirai, Toshitaka Yoshii, Shigenori Kawabata, Kunihiko Takahashi, Atsushi Okawa: Factors influencing the long-term outcomes of instrumentation surgery for degenerative lumbar spondylolisthesis: a post-hoc analysis of a prospective randomized study. Spine J. 2023.06; 23 (6): 799-804. ( PubMed , DOI )

Toshiki Sera, Norio Otani, Hideo Bannai, Takanori Hasegawa, Takehiro Umemura, Hideki Honda, Akio Kimura: The current status of emergency departments in secondary emergency medical institutions in Japan: a questionnaire survey. International Journal of Emergency Medicine. 2023.06; 16 (1): 40. ( PubMed , DOI )

Saeka Takabayashi, Emiko Okada, Takumi Hirata, Hidemi Takimoto, Mieko Nakamura, Satoshi Sasaki, Kunihiko Takahashi, Koshi Nakamura, Shigekazu Ukawa, Akiko Tamakoshi: Nutritional Adequacy Assessment of the Japanese Diet Using the Number of Dishes Compared to Existing Dietary Diversity Indices: A Cross-Sectional Analysis from the 2012 National Health and Nutrition Survey, Japan. J Nutr Sci Vitaminol (Tokyo). 2023.06; 69 (3): 197-205. ( PubMed , DOI )

Asuka Hirose, Masakazu Terauchi, Tamami Odai, Ayako Fudono, Kotoi Tsurane, Masaki Sekiguchi, Misako Iwata, Tatsuhiko Anzai, Kunihiko Takahashi, Naoyuki Miyasaka: Investigation of exacerbating factors for postpartum hair loss: a questionnaire-based cross-sectional study. Int J Womens Dermatol. 2023.06; 9 (2): e084. ( PubMed , DOI )

Latorre AAE, Nakamura K, Seino K, Hasegawa T.: Vector autoregression for forecasting the number of COVID-19 cases and analyzing behavioral indicators in the Philippines: an ecologic time-trend study, JMIR Form Res . 2023.06; 7 e46357. ( DOI )

Hideo Bannai, Mitsuru Funakoshi, Kazuhiro Kurita, Yuto Nakashima, Kazuhisa Seto, Takeaki Uno: Optimal LZ-End Parsing Is Hard Proc. 34th Annual Symposium on Combinatorial Pattern Matching (CPM 2023). 2023.06; 3-11. ( DOI )

Oka, T; Higa, T; Sugahara, O; Koga, D; Nakayama, S; Nakayama, KI: Ablation of p57⁺ Quiescent Cancer Stem Cells Suppresses Recurrence after Chemotherapy of Intestinal Tumors CANCER RESEARCH. 2023.05; 83 (9): 1393-1409. ( PubMed , DOI )

Fujinuma S, Nakatsumi H, Shimizu H, Sugiyama S, Harada A, Goya T, Tanaka M, Kohjima M, Takahashi M, Izumi Y, Yagi M, Kang D, Kaneko M, Shigeta M, Bamba T, Ohkawa Y, Nakayama KI: FOXK1 promotes nonalcoholic fatty liver disease by mediating mTORC1-dependent inhibition of hepatic fatty acid oxidation Cell Reports. 2023.05; 42 (5): 112530. ( DOI )

Mitsuaki Nishikimi, Shinichiro Ohshimo, Wataru Fukumoto, Tatsuhiko Anzai, Kazuo Awai, Takayuki Ogura, Toshikazu Abe, Mamoru Masuda, Kenji Fujizuka, Mitsunobu Nakamura, Michihito Kyo, Kunihiko Takahashi, Nobuaki Shime: Characteristics of the pulmonary opacities on chest CT associated with difficulty in short-term liberation from veno-venous ECMO in patients with severe ARDS. Respir Res. 2023.05; 24 (1): 128. ( PubMed , DOI )

Ryuya Edahiro, Yuya Shirai, Yusuke Takeshima, Shuhei Sakakibara, Yuta Yamaguchi, Teruaki Murakami, Takayoshi Morita, Yasuhiro Kato, Yu-Chen Liu, Daisuke Motooka, Yoko Naito, Ayako Takuwa, Fuminori Sugihara, Kentaro Tanaka, James B Wing, Kyuto Sonehara, Yoshihiko Tomofuji; Japan COVID-19 Task Force; Ho Namkoong, Hiromu Tanaka, Ho Lee, Koichi Fukunaga, Haruhiko Hirata, Yoshito Takeda, Daisuke Okuzaki, Atsushi Kumanogoh, Yukinori Okada: Single-cell analyses and host genetics highlight the role of innate immune cells in COVID-19 severity. Nat Genet. 2023.05; 55 (5): 753-767. ( PubMed , DOI )

Azekawa S, Chubachi S, Asakura T, Namkoong H, Sato Y, Edahiro R, Lee H, Tanaka H, Otake S, Nakagawara K, Fukushima T, Watase M, Sakurai K, Kusumoto T, Masaki K, Kamata H, Ishii M, Hasegawa N, Okada Y, Koike R, Kitagawa Y, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K, Japan COVID-19 Task Force: Serum KL-6 levels predict clinical outcomes and are associated with MUC1 polymorphism in Japanese patients with COVID-19. BMJ open respiratory research. 2023.05; 10 (1): ( PubMed , DOI )

Kitagawa A, Osawa T, Noda M, Kobayashi Y, Aki S, Nakano Y, Saito T, Shimizu D, Komatsu H, Sugaya M, Takahashi J, Kosai K, Takao S, Motomura Y, Sato K, Hu Q, Fujii A, Wakiyama H, Tobo T, Uchida H, Sugimachi K, Shibata K, Utsunomiya T, Kobayashi S, Ishii H, Hasegawa T, Masuda T, Matsui Y, Niida A, Soga T, Suzuki Y, Miyano S, Aburatani H, Doki Y, Eguchi H, Mori M, Nakayama KI, Shimamura T, Shibata T, Mimori K: Convergent genomic diversity and novel BCAA metabolism in intrahepatic cholangiocarcinoma. British journal of cancer. 2023.04; 128 (12): 2206-2217. ( PubMed , DOI )

Hozumi H, Shimizu H: Bayesian network enables interpretable and state-of-the-art prediction of immunotherapy responses in cancer patients PNAS Nexus. 2023.04; 2 (5): pgad133. ( PubMed , DOI )

Hideo Bannai, Tomohiro I, Tomasz Kociumaka, Dominik Köppl, Simon J. Puglisi: Computing Longest Lyndon Subsequences and Longest Common Lyndon Subsequences Algorithmica. 2023.04; ( DOI )

Yamaguchi K, Nakagawa S, Saku A, Isobe Y, Yamaguchi R, Sheridan P, Takane K, Ikenoue T, Zhu C, Miura M, Okawara Y, Nagatoishi S, Kozuka-Hata H, Oyama M, Aikou S, Ahiko Y, Shida D, Tsumoto K, Miyano S, Imoto S, Furukawa Y: Bromodomain protein BRD8 regulates cell cycle progression in colorectal cancer cells through a TIP60-independent regulation of the pre-RC complex. iScience. 2023.04; 26 (4): 106563. ( PubMed , DOI )

Shintaro Shimizu, Gen Tanabe, Kairi Hayashi, Hiroshi Churei, Tatsuhiko Anzai, Kunihiko Takahashi, Toshiaki Ueno, Kenji Fueki: Quantitative text analysis of the mechanisms of tooth injury: Analysis of accidents in five sports that occurred in 15years under school control. Dent Traumatol. 2023.04; 39 (2): 132-139. ( PubMed , DOI )

Kaburagi T, Shiba N, Yamato G, Yoshida K, Tabuchi K, Ohki K, Ishikita E, Hara Y, Shiraishi Y, Kawasaki H, Sotomatsu M, Takizawa T, Taki T, Kiyokawa N, Tomizawa D, Horibe K, Miyano S, Taga T, Adachi S, Ogawa S, Hayashi Y: UBTF-internal tandem duplication as a novel poor prognostic factor in pediatric acute myeloid leukemia. Genes, chromosomes & cancer. 2023.04; 62 (4): 202-209. ( PubMed , DOI )

Washimi K, Kasajima R, Shimizu E, Sato S, Okubo Y, Yoshioka E, Narimatsu H, Hiruma T, Katayama K, Yamaguchi R, Yamaguchi K, Furukawa Y, Miyano S, Imoto S, Yokose T, Miyagi Y: Histological markers, sickle-shaped blood vessels, myxoid area, and infiltrating growth pattern help stratify the prognosis of patients with myxofibrosarcoma/undifferentiated sarcoma. Scientific reports. 2023.04; 13 (1): 6744. ( PubMed , DOI )

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Nakagawara K, Kamata H, Chubachi S, Namkoong H, Tanaka H, Lee H, Otake S, Fukushima T, Kusumoto T, Morita A, Azekawa S, Watase M, Asakura T, Masaki K, Ishii M, Endo A, Koike R, Ishikura H, Takata T, Matsushita Y, Harada N, Kokutou H, Yoshiyama T, Kataoka K, Mutoh Y, Miyawaki M, Ueda S, Ono H, Ono T, Shoko T, Muranaka H, Kawamura K, Mori N, Mochimaru T, Fukui M, Chihara Y, Nagasaki Y, Okamoto M, Amishima M, Odani T, Tani M, Nishi K, Shirai Y, Edahiro R, Ando A, Hashimoto N, Ogura S, Kitagawa Y, Kita T, Kagaya T, Kimura Y, Miyazawa N, Tsuchida T, Fujitani S, Murakami K, Sano H, Sato Y, Tanino Y, Otsuki R, Mashimo S, Kuramochi M, Hosoda Y, Hasegawa Y, Ueda T, Takaku Y, Ishiguro T, Fujiwara A, Kuwahara N, Kitamura H, Hagiwara E, Nakamori Y, Saito F, Kono Y, Abe S, Ishii T, Ohba T, Kusaka Y, Watanabe H, Masuda M, Watanabe H, Kimizuka Y, Kawana A, Kasamatsu Y, Hashimoto S, Okada Y, Takano T, Katayama K, Ai M, Kumanogoh A, Sato T, Tokunaga K, Imoto S, Kitagawa Y, Kimura A, Miyano S, Hasegawa N, Ogawa S, Kanai T, Fukunaga K, Japan COVID-19 Task Force: Impact of respiratory bacterial infections on mortality in Japanese patients with COVID-19: a retrospective cohort study. BMC pulmonary medicine. 2023.04; 23 (1): 146. ( PubMed , DOI )

Inferring Strings from Position Heaps in Linear Time 2023.03; 115-126. ( DOI )

Hiroyuki Inose, Tsuyoshi Kato, Shoichi Ichimura, Hiroaki Nakamura, Masatoshi Hoshino, Shinji Takahashi, Daisuke Togawa, Toru Hirano, Yasuaki Tokuhashi, Tetsuro Ohba, Hirotaka Haro, Takashi Tsuji, Kimiaki Sato, Yutaka Sasao, Masahiko Takahata, Koji Otani, Suketaka Momoshima, Takashi Hirai, Toshitaka Yoshii, Kunihiko Takahashi, Atsushi Okawa: Factors affecting the quality of life in the chronic phase of thoracolumbar osteoporotic vertebral fracture managed conservatively with a brace. Spine J. 2023.03; 23 (3): 425-432. ( PubMed , DOI )

Nobuyuki Nosaka, Tatsuhiko Anzai, Ryo Uchimido, Yuka Mishima, Kunihiko Takahashi, Kenji Wakabayashi: An anthropometric evidence against the use of age-based estimation of bodyweight in pediatric patients admitted to intensive care units. Sci Rep. 2023.03; 13 (1): 3574. ( PubMed , DOI )

Nannya Y, Tobiasson M, Sato S, Bernard E, Ohtake S, Takeda J, Creignou M, Zhao L, Kusakabe M, Shibata Y, Nakamura N, Watanabe M, Hiramoto N, Shiozawa Y, Shiraishi Y, Tanaka H, Yoshida K, Kakiuchi N, Makishima H, Nakagawa MM, Usuki K, Watanabe M, Imada K, Handa H, Taguchi M, Kiguchi T, Ohyashiki K, Ishikawa T, Takaori-Kondo A, Tsurumi H, Kasahara S, Chiba S, Naoe T, Miyano S, Papaemmanuil E, Miyazaki Y, Hellström Lindberg E, Ogawa S: Post-azacitidine clone size predicts outcome of patients with myelodysplastic syndromes and related myeloid neoplasms. Blood advances. 2023.03; 7 (14): 3624-3636. ( PubMed , DOI )

Masaki Ozawa, Tatsuhiko Anzai, Takashi Yamauchi, Kunihiko Takahashi: Do changes in working hours increase stress in Japanese white-collar workers? Front Public Health. 2023.02; 11 1076024. ( PubMed , DOI )

Computer-Aided Diagnosis of Early-Stage Colorectal Cancer Using Non-Magnified Endoscopic White Light Images. 2023.02; ( PubMed , DOI )

Benedikt Kirsch-Gerweck, Leonard Bohnenkämper, Michel T Henrichs, Jarno N Alanko, Hideo Bannai, Bastien Cazaux, Pierre Peterlongo, Joachim Burger, Jens Stoye, Yoan Diekmann: HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets Molecular Biology and Evolution. 2023.02; 40 (3): ( DOI )

Park H, Imoto S, Miyano S: Gene Regulatory Network-Classifier: Gene Regulatory Network-Based Classifier and Its Applications to Gastric Cancer Drug (5-Fluorouracil) Marker Identification. Journal of computational biology : a journal of computational molecular cell biology. 2023.02; 30 (2): 223-243. ( PubMed , DOI )

Makishima H, Saiki R, Nannya Y, Korotev S, Gurnari C, Takeda J, Momozawa Y, Best S, Krishnamurthy P, Yoshizato T, Atsuta Y, Shiozawa Y, Iijima-Yamashita Y, Yoshida K, Shiraishi Y, Nagata Y, Kakiuchi N, Onizuka M, Chiba K, Tanaka H, Kon A, Ochi Y, Nakagawa MM, Okuda R, Mori T, Yoda A, Itonaga H, Miyazaki Y, Sanada M, Ishikawa T, Chiba S, Tsurumi H, Kasahara S, Müller-Tidow C, Takaori-Kondo A, Ohyashiki K, Kiguchi T, Matsuda F, Jansen JH, Polprasert C, Blombery P, Kamatani Y, Miyano S, Malcovati L, Haferlach T, Kubo M, Cazzola M, Kulasekararaj AG, Godley LA, Maciejewski JP, Ogawa S: Germ line DDX41 mutations define a unique subtype of myeloid neoplasms. Blood. 2023.02; 141 (5): 534-549. ( PubMed , DOI )

Kohtaro Kikuchi, Tatsuhiko Anzai, Kunihiko Takahashi: The Unusual Increase in Suicides Among Women in Japan During the COVID-19 Pandemic: A Time-series Analysis Until October 2021. J Epidemiol. 2023.01; 33 (1): 45-51. ( PubMed , DOI )

Yuuki Yonemoto, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai: Space-Efficient STR-IC-LCS Computation Lecture Notes in Computer Science. 2023.01; 372-384. ( DOI )

Yamashita S, Okamoto T, Kawahara T, Tateishi T, Anzai T, Takahashi K, Fushimi K, Miyazaki Y: Database analysis of hypersensitivity pneumonitis in Japan. Respiratory investigation. 2023.01; 61 (2): 172-180. ( PubMed , DOI )

A training pipeline of an arrhythmia classifier for atrial fibrillation detection using Photoplethysmography signal. 2023; 14 1084837. ( PubMed , DOI )

Park H, Imoto S, Miyano S: Comprehensive information-based differential gene regulatory networks analysis (CIdrgn): Application to gastric cancer and chemotherapy-responsive gene network identification. PloS one. 2023; 18 (8): e0286044. ( PubMed , DOI )

Hiroyuki Inose, Tsuyoshi Kato, Shoji Tomizawa, Akane Ariga, Takayuki Motoyoshi, Kazuyuki Fukushima, Kunihiko Takahashi, Toshitaka Yoshii, Atsushi Okawa: Impact of romosozumab on serum calcium concentration and factors predicting the fluctuations in calcium concentration upon romosozumab administration: A multicenter retrospective study. Bone Rep. 2022.12; 17 101635. ( PubMed , DOI )

Ho Lee, Shotaro Chubachi, Ho Namkoong, Takanori Asakura, Hiromu Tanaka, Shiro Otake, Kensuke Nakagawara, Atsuho Morita, Takahiro Fukushima, Mayuko Watase, Tatsuya Kusumoto, Katsunori Masaki, Hirofumi Kamata, Makoto Ishii, Naoki Hasegawa, Norihiro Harada, Tetsuya Ueda, Soichiro Ueda, Takashi Ishiguro, Ken Arimura, Fukuki Saito, Takashi Yoshiyama, Yasushi Nakano, Yoshikazu Mutoh, Yusuke Suzuki, Koji Murakami, Yukinori Okada, Ryuji Koike, Yuko Kitagawa, Akinori Kimura, Seiya Imoto, Satoru Miyano, Seishi Ogawa, Takanori Kanai, Koichi Fukunaga, : Characteristics of hospitalized patients with COVID-19 during the first to fifth waves of infection: a report from the Japan COVID-19 Task Force. BMC Infect Dis. 2022.12; 22 (1): 935. ( PubMed , DOI )

Watase M, Masaki K, Chubachi S, Namkoong H, Tanaka H, Lee H, Fukushima T, Otake S, Nakagawara K, Kusumoto T, Asakura T, Kamata H, Ishii M, Hasegawa N, Oyamada Y, Harada N, Ueda T, Ueda S, Ishiguro T, Arimura K, Saito F, Yoshiyama T, Nakano Y, Mutoh Y, Suzuki Y, Edahiro R, Sano H, Sato Y, Okada Y, Koike R, Kitagawa Y, Tokunaga K, Kimura A, Imoto S, Miyano S, Ogawa S, Kanai T, Fukunaga K, Japan COVID-19 Task Force: Impact of accumulative smoking exposure and chronic obstructive pulmonary disease on COVID-19 outcomes: report based on findings from the Japan COVID-19 task force. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases. 2022.12; 128 121-127. ( PubMed , DOI )

Expert-level aspiration and penetration detection during flexible endoscopic evaluation of swallowing with artificial intelligence-assisted diagnosis. 2022.12; 12 (1): 21689. ( PubMed , DOI )

Tomoki Nakaya, Kunihiko Takahashi, Hideto Takahashi, Seiji Yasumura, Tetsuya Ohira, Hiroki Shimura, Satoru Suzuki, Satoshi Suzuki, Manabu Iwadate, Susumu Yokoya, Hitoshi Ohto, Kenji Kamiya: Revisiting the Geographical Distribution of Thyroid Cancer Incidence in Fukushima Prefecture: Analysis of Data From the Second- and Third-round Thyroid Ultrasound Examination. J Epidemiol. 2022.12; 32 (Suppl_XII): S76-S83. ( PubMed , DOI )

Tatsuhiko Anzai, Kohtaro Kikuchi, Keisuke Fukui, Yuri Ito, Kunihiko Takahashi: Have restrictions on human mobility impacted suicide rates during the COVID-19 pandemic in Japan? Psychiatry Res. 2022.11; 317 114898. ( PubMed , DOI )

Butler-Laporte Guillaume, Povysil Gundula, Kosmicki Jack A., Cirulli Elizabeth T., Drivas Theodore, Furini Simone, Saad Chadi, Schmidt Axel, Olszewski Pawel, Korotko Urszula, Quinodoz Mathieu, Celik Elifnaz, Kundu Kousik, Walter Klaudia, Jung Junghyun, Stockwell Amy D., Sloofman Laura G., Jordan Daniel M., Thompson Ryan C., Del Valle Diane, Simons Nicole, Cheng Esther, Sebra Robert, Schadt Eric E., Kim-Schulze Seunghee, Gnjatic Sacha, Merad Miriam, Buxbaum Joseph D., Beckmann Noam D., Charney Alexander W., Przychodzen Bartlomiej, Chang Timothy, Pottinger Tess D., Shang Ning, Brand Fabian, Fava Francesca, Mari Francesca, Chwialkowska Karolina, Niemira Magdalena, Pula Szymon, Baillie J. Kenneth, Stuckey Alex, Salas Antonio, Bello Xabier, Pardo-Seco Jacobo, Gomez-Carballa Alberto, Rivero-Calle Irene, Martinon-Torres Federico, Ganna Andrea, Karczewski Konrad J., Veerapen Kumar, Bourgey Mathieu, Bourque Guillaume, Eveleigh Robert Jm, Forgetta Vincenzo, Morrison David, Langlais David, Lathrop Mark, Mooser Vincent, Nakanishi Tomoko, Frithiof Robert, Hultstrom Michael, Lipcsey Miklos, Marincevic-Zuniga Yanara, Nordlund Jessica, Barrett Kelly M. Schiabor, Lee William, Bolze Alexandre, White Simon, Riffle Stephen, Tanudjaja Francisco, Sandoval Efren, Neveux Iva, Dabe Shaun, Casadei Nicolas, Motameny Susanne, Alaamery Manal, Massadeh Salam, Aljawini Nora, Almutairi Mansour S., Arabi Yaseen M., Alqahtani Saleh A., Al Harthi Fawz S., Almutairi Amal, Alqubaishi Fatima, Alotaibi Sarah, Binowayn Albandari, Alsolm Ebtehal A., El Bardisy Hadeel, Fawzy Mohammad, Cai Fang, Soranzo Nicole, Butterworth Adam, Geschwind Daniel H., Arteaga Stephanie, Stephens Alexis, Butte Manish J., Boutros Paul C., Yamaguchi Takafumi N., Tao Shu, Eng Stefan, Sanders Timothy, Tung Paul J., Broudy Michael E., Pan Yu, Gonzalez Alfredo, Chavan Nikhil, Johnson Ruth, Pasaniuc Bogdan, Yaspan Brian, Smieszek Sandra, Rivolta Carlo, Bibert Stephanie, Bochud Pierre-Yves, Dabrowski Maciej, Zawadzki Pawel, Sypniewski Mateusz, Kaja Elzbieta, Chariyavilaskul Pajaree, Nilaratanakul Voraphoj, Hirankarn Nattiya, Shotelersuk Vorasuk, Pongpanich Monnat, Phokaew Chureerat, Chetruengchai Wanna, Tokunaga Katsushi, Sugiyama Masaya, Kawai Yosuke, Hasegawa Takanori, Naito Tatsuhiko, Namkoong Ho, Edahiro Ryuya, Kimura Akinori, Ogawa Seishi, Kanai Takanori, Fukunaga Koichi, Okada Yukinori, Imoto Seiya, Miyano Satoru, Mangul Serghei, Abedalthagafi Malak S., Zeberg Hugo, Grzymski Joseph J., Washington Nicole L., Ossowski Stephan, Ludwig Kerstin U., Schulte Eva C., Riess Olaf, Moniuszko Marcin, Kwasniewski Miroslaw, Mbarek Hamdi, Ismail Said I., Verma Anurag, Goldstein David B., Kiryluk Krzysztof, Renieri Alessandra, Ferreira Manuel A. R., Richards J. Brent: Exome-wide association study to identify rare variants influencing COVID-19 outcomes: Results from the Host Genetics Initiative PLOS GENETICS. 2022.11; 18 (11): e1010367. ( PubMed , DOI )

Saiki Ryunosuke, Namkoong Ho, Edahiro Ryuya, Sonehara Kyuto, Wang Qingbo S., Hasegawa Takanori, Momozawa Yukihide, Makishima Hideki, Nannya Yasuhito, Kakiuchi Nobuyuki, Terao Chikashi, Shiraishi Yuichi, Chiba Kenichi, Tanaka Hiroko, Matsuda Koichi, Morisaki Takayuki, Murakami Yoshinori, Kamatani Yoichiro, Kubo Michiaki, Kimura Akinori, Imoto Seiya, Miyano Satoru, Kanai Takanori, Fukunaga Koich, Okada Yukinori, Ogawa Seishi: Detailed Analysis of the Impact of Clonal Hematopoiesis on the Risk of Severe COVID-19 Infection BLOOD. 2022.11; 140 (Supplement 1): 5747-5748. ( DOI )

Miki Amemiya, Masateru Takigawa, Masahiko Goya, Claire A Martin, Tatsuhiko Anzai, Kunihiko Takahashi, Yuki Shimizu, Takashi Ikenouchi, Tatsuaki Kamata, Tasuku Yamamoto, Takuro Nishimura, Yasuhiro Shirai, Susumu Tao, Shinsuke Miyazaki, Tetsuo Sasano: Comparison of two catheters measuring local impedance: local impedance variation vs lesion characteristics and steam pops. J Interv Card Electrophysiol. 2022.11; 65 (2): 419-428. ( PubMed , DOI )

Nakagawara Kensuke, Chubachi Shotaro, Namkoong Ho, Tanaka Hiromu, Lee Ho, Azekawa Shuhei, Otake Shiro, Fukushima Takahiro, Morita Atsuho, Watase Mayuko, Sakurai Kaori, Kusumoto Tatsuya, Asakura Takanori, Masaki Katsunori, Kamata Hirofumi, Ishii Makoto, Hasegawa Naoki, Harada Norihiro, Ueda Tetsuya, Ueda Soichiro, Ishiguro Takashi, Arimura Ken, Saito Fukuki, Yoshiyama Takashi, Nakano Yasushi, Mutoh Yoshikazu, Suzuki Yusuke, Edahiro Ryuya, Murakami Koji, Sato Yasunori, Okada Yukinori, Koike Ryuji, Kitagawa Yuko, Tokunaga Katsushi, Kimura Akinori, Imoto Seiya, Miyano Satoru, Ogawa Seishi, Kanai Takanori, Fukunaga Koichi: Impact of upper and lower respiratory symptoms on COVID-19 outcomes: a multicenter retrospective cohort study RESPIRATORY RESEARCH. 2022.11; 23 (1): 315. ( PubMed , DOI )

Sleep Staging Framework with Physiologically Harmonized Sub-Networks. 2022.11; 209 18-28. ( PubMed , DOI )

Laurentius Leonard, Shunsuke Inenaga, Hideo Bannai, Takuya Mieno: Online algorithms for finding distinct substrings with length and multiple prefix and suffix conditions String Processing and Information Retrieval. 2022.11; 24-37. ( DOI )

Noriyuki Takahashi, Takaharu Matsuhisa, Kunihiko Takahashi, Muneyoshi Aomatsu, Stewart W Mercer, Nobutaro Ban: A 2-item version of the Japanese Consultation and Relational Empathy measure: a pilot study using secondary analysis of a cross-sectional survey in primary care. Fam Pract. 2022.11; 39 (6): 1169-1175. ( PubMed , DOI )

Computing the Parameterized Burrows–Wheeler Transform Online 2022.11; 70-85. ( DOI )

Watanabe K, Kimura S, Seki M, Isobe T, Kubota Y, Sekiguchi M, Sato-Otsubo A, Hiwatari M, Kato M, Oka A, Koh K, Sato Y, Tanaka H, Miyano S, Kawai T, Hata K, Ueno H, Nannya Y, Suzuki H, Yoshida K, Fujii Y, Nagae G, Aburatani H, Ogawa S, Takita J: Identification of the ultrahigh-risk subgroup in neuroblastoma cases through DNA methylation analysis and its treatment exploiting cancer metabolism. Oncogene. 2022.11; 41 (46): 4994-5007. ( PubMed , DOI )

Park H, Miyano S: Computational Tactics for Precision Cancer Network Biology. International journal of molecular sciences. 2022.11; 23 (22): ( PubMed , DOI )

Katsuhito Nakashima, Noriki Fujisato, Diptarama Hendrian, Yuto Nakashima, Ryo Yoshinaka, Shunsuke Inenaga, Hideo Bannai, Ayumi Shinohara, Masayuki Takeda: Parameterized DAWGs: Efficient constructions and bidirectional pattern searches Theoretical Computer Science. 2022.10; 933 21-42. ( DOI )

Shimizu H, Kodama M, Matsumoto M, Orba Y, Sasaki Y, Sato A, Sawa H, Nakayama KI: LIGHTHOUSE illuminates therapeutics for a variety of diseases including COVID-19 iScience. 2022.10; 25 (11): 105314. ( PubMed , DOI )

Akira Endo, Kazuma Yamakawa, Takashi Tagami, Yutaka Umemura, Kyosuke Takahashi, Hiroki Nagasawa, Yuichi Araki, Mitsuaki Kojima, Toshiki Sera, Masayuki Yagi, Ryo Yamamoto, Jiro Takahashi, Masaki Nakane, Chikashi Takeda, Chihiro Narita, Satoshi Kazuma, Hiroko Okura, Hiroyuki Takahashi, Takeshi Wada, Shu Tahara, Ayaka Matsuoka, Todani Masaki, Atsushi Shiraishi, Keiichiro Shimoyama, Yuta Yokokawa, Rintaro Nakamura, Hisako Sageshima, Yuichiro Yanagida, Kunihiko Takahashi, Yasuhiro Otomo: Optimal target blood pressure in elderly with septic shock (OPTPRESS) trial: study protocol for a randomized controlled trial. Trials. 2022.09; 23 (1): 799. ( PubMed , DOI )

Toru Shirahata, Hideaki Sato, Sanehiro Yogi, Kaiji Inoue, Mamoru Niitsu, Hitoshi Miyazawa, Tomoe Akagami, Machika Soma, Tomohiko Mio, Makoto Nagata, Yuki Nishida, Shigeho Tanaka, Fuminori Katsukawa, Hidetoshi Nakamura: Possible association of high-density lipoprotein cholesterol levels with trunk muscle deficits and decrease in energy expenditure in patients with or at risk for COPD: A pilot study. Respir Investig. 2022.09; 60 (5): 720-724. ( PubMed , DOI )

Takahiro Mitsumura, Tsukasa Okamoto, Mizuho Tosaka, Takashi Yamana, Sho Shimada, Yuki Iijima, Rie Sakakibara, Sho Shibata, Takayuki Honda, Tsuyoshi Shirai, Masahiro Ishizuka, Junichi Aiboshi, Haruhiko Furusawa, Tomoya Tateishi, Meiyo Tamaoka, Hidenobu Shigemitsu, Hirokuni Arai, Yasuhiro Otomo, Shuji Tohda, Tatsuhiko Anzai, Kunihiko Takahashi, Shinsuke Yasuda, Yasunari Miyazaki: Association of SARS-CoV-2 RNA Copy Number with the COVID-19 Mortality Rate and Its Effect on the Predictive Performance of Mortality in Severe Cases. Jpn J Infect Dis. 2022.09; 75 (5): 504-510. ( PubMed , DOI )

がん免疫相互作用の数理シミュレーションによる微小環境の動態の解明(Unraveling dynamics of the tumor-microenvironment through mathematical simulation of cancer immune interactions) 2022.09; 81回 P-3383. ( ichushi )

Fukushima Takahiro, Chubachi Shotaro, Namkoong Ho, Asakura Takanori, Tanaka Hiromu, Lee Ho, Azekawa Shuhei, Okada Yukinori, Koike Ryuji, Kimura Akinori, Imoto Seiya, Miyano Satoru, Ogawa Seishi, Kanai Takanori, Fukunaga Koichi: Clinical significance of prediabetes, undiagnosed diabetes and diagnosed diabetes on critical outcomes in COVID-19: Integrative analysis from the Japan COVID-19 task force DIABETES OBESITY & METABOLISM. 2022.09; 25 (1): 144-155. ( PubMed , DOI )

Otake Shiro, Chubachi Shotaro, Namkoong Ho, Nakagawara Kensuke, Tanaka Hiromu, Lee Ho, Morita Atsuho, Fukushima Takahiro, Watase Mayuko, Kusumoto Tatsuya, Masaki Katsunori, Kamata Hirofumi, Ishii Makoto, Hasegawa Naoki, Harada Norihiro, Ueda Tetsuya, Ueda Soichiro, Ishiguro Takashi, Arimura Ken, Saito Fukuki, Yoshiyama Takashi, Nakano Yasushi, Mutoh Yoshikazu, Suzuki Yusuke, Murakami Koji, Okada Yukinori, Koike Ryuji, Kitagawa Yuko, Kimura Akinori, Imoto Seiya, Miyano Satoru, Ogawa Seishi, Kanai Takanori, Fukunaga Koichi: Clinical clustering with prognostic implications in Japanese COVID-19 patients: report from Japan COVID-19 Task Force, a nation-wide consortium to investigate COVID-19 host genetics BMC INFECTIOUS DISEASES. 2022.09; 22 (1): 735. ( PubMed , DOI )

Estimation of Left Ventricular Ejection Fraction Using Cardiovascular Hemodynamic Parameters and Pulse Morphological Characteristics with Machine Learning Algorithms. 2022.09; 14 (19): ( PubMed , DOI )

Keibun Liu, Kensuke Nakamura, Sapna R Kudchadkar, Hajime Katsukawa, Peter Nydahl, Eugene Wesley Ely, Kunihiko Takahashi, Shigeaki Inoue, Osamu Nishida: Mobilization and Rehabilitation Practice in ICUs During the COVID-19 Pandemic. J Intensive Care Med. 2022.09; 37 (9): 1256-1264. ( PubMed , DOI )

Hideo Bannai, Keisuke Goto, Masakazu Ishihata, Shunsuke Kanda, Dominik Köppl, Takaaki Nishimoto: Computing NP-hard Repetitiveness Measures via MAX-SAT Proc. The 30th Annual European Symposium on Algorithms. 2022.09; 244 12:1-12:16. ( DOI )

Ayako Morita, Yoshimitsu Takahashi, Kunihiko Takahashi, Takeo Fujiwara: Depressive symptoms homophily among community-dwelling older adults in japan: A social networks analysis. Front Public Health. 2022.09; 10 965026. ( PubMed , DOI )

Keiji Oi, Hirokuni Arai, Eiki Nagaoka, Tatsuki Fujiwara, Kiyotoshi Oishi, Masashi Takeshita, Tatsuhiko Anzai, Tomohiro Mizuno: Long-term Outcomes of Papillary Muscle Relocation Anteriorly for Functional Mitral Regurgitation Interact Cardiovasc Thorac Surg.. 2022.09; ivac245. ( PubMed , DOI )

Takeuchi Y, Yoshida K, Halik A, Kunitz A, Suzuki H, Kakiuchi N, Shiozawa Y, Yokoyama A, Inoue Y, Hirano T, Yoshizato T, Aoki K, Fujii Y, Nannya Y, Makishima H, Pfitzner BM, Bullinger L, Hirata M, Jinnouchi K, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Okamoto T, Haga H, Ogawa S, Damm F: The landscape of genetic aberrations in myxofibrosarcoma. International journal of cancer. 2022.08; 151 (4): 565-577. ( PubMed , DOI )

Computer-aided diagnosis of serrated colorectal lesions using non-magnified white-light endoscopic images. 2022.08; 37 (8): 1875-1884. ( PubMed , DOI )

Qingbo S Wang, Ryuya Edahiro, Ho Namkoong, Takanori Hasegawa, Yuya Shirai, Kyuto Sonehara, Hiromu Tanaka, Ho Lee, Ryunosuke Saiki, Takayoshi Hyugaji, Eigo Shimizu, Kotoe Katayama, Masahiro Kanai, Tatsuhiko Naito, Noah Sasa, Kenichi Yamamoto, Yasuhiro Kato, Takayoshi Morita, Kazuhisa Takahashi, Norihiro Harada, Toshio Naito, Makoto Hiki, Yasushi Matsushita, Haruhi Takagi, Masako Ichikawa, Ai Nakamura, Sonoko Harada, Yuuki Sandhu, Hiroki Kabata, Katsunori Masaki, Hirofumi Kamata, Shinnosuke Ikemura, Shotaro Chubachi, Satoshi Okamori, Hideki Terai, Atsuho Morita, Takanori Asakura, Junichi Sasaki, Hiroshi Morisaki, Yoshifumi Uwamino, Kosaku Nanki, Sho Uchida, Shunsuke Uno, Tomoyasu Nishimura, Takashri Ishiguro, Taisuke Isono, Shun Shibata, Yuma Matsui, Chiaki Hosoda, Kenji Takano, Takashi Nishida, Yoichi Kobayashi, Yotaro Takaku, Noboru Takayanagi, Soichiro Ueda, Ai Tada, Masayoshi Miyawaki, Masaomi Yamamoto, Eriko Yoshida, Reina Hayashi, Tomoki Nagasaka, Sawako Arai, Yutaro Kaneko, Kana Sasaki, Etsuko Tagaya, Masatoshi Kawana, Ken Arimura, Kunihiko Takahashi, Tatsuhiko Anzai, Satoshi Ito, Akifumi Endo, Yuji Uchimura, Yasunari Miyazaki, Takayuki Honda, Tomoya Tateishi, Shuji Tohda, Naoya Ichimura, Kazunari Sonobe, Chihiro Tani Sassa, Jun Nakajima, Yasushi Nakano, Yukiko Nakajima, Ryusuke Anan, Ryosuke Arai, Yuko Kurihara, Yuko Harada, Kazumi Nishio, Tetsuya Ueda, Masanori Azuma, Ryuichi Saito, Toshikatsu Sado, Yoshimune Miyazaki, Ryuichi Sato, Yuki Haruta, Tadao Nagasaki, Yoshinori Yasui, Yoshinori Hasegawa, Yoshikazu Mutoh, Tomoki Kimura, Tomonori Sato, Reoto Takei, Satoshi Hagimoto, Yoichiro Noguchi, Yasuhiko Yamano, Hajime Sasano, Sho Ota, Yasushi Nakamori, Kazuhisa Yoshiya, Fukuki Saito, Tomoyuki Yoshihara, Daiki Wada, Hiromu Iwamura, Syuji Kanayama, Shuhei Maruyama, Takashi Yoshiyama, Ken Ohta, Hiroyuki Kokuto, Hideo Ogata, Yoshiaki Tanaka, Kenichi Arakawa, Masafumi Shimoda, Takeshi Osawa, Hiroki Tateno, Isano Hase, Shuichi Yoshida, Shoji Suzuki, Miki Kawada, Hirohisa Horinouchi, Fumitake Saito, Keiko Mitamura, Masao Hagihara, Junichi Ochi, Tomoyuki Uchida, Rie Baba, Daisuke Arai, Takayuki Ogura, Hidenori Takahashi, Shigehiro Hagiwara, Genta Nagao, Shunichiro Konishi, Ichiro Nakachi, Koji Murakami, Mitsuhiro Yamada, Hisatoshi Sugiura, Hirohito Sano, Shuichiro Matsumoto, Nozomu Kimura, Yoshinao Ono, Hiroaki Baba, Yusuke Suzuki, Sohei Nakayama, Keita Masuzawa, Shinichi Namba, Takayuki Shiroyama, Yoshimi Noda, Takayuki Niitsu, Yuichi Adachi, Takatoshi Enomoto, Saori Amiya, Reina Hara, Yuta Yamaguchi, Teruaki Murakami, Tomoki Kuge, Kinnosuke Matsumoto, Yuji Yamamoto, Makoto Yamamoto, Midori Yoneda, Kazunori Tomono, Kazuto Kato, Haruhiko Hirata, Yoshito Takeda, Hidefumi Koh, Tadashi Manabe, Yohei Funatsu, Fumimaro Ito, Takahiro Fukui, Keisuke Shinozuka, Sumiko Kohashi, Masatoshi Miyazaki, Tomohisa Shoko, Mitsuaki Kojima, Tomohiro Adachi, Motonao Ishikawa, Kenichiro Takahashi, Takashi Inoue, Toshiyuki Hirano, Keigo Kobayashi, Hatsuyo Takaoka, et al: The whole blood transcriptional regulation landscape in 465 COVID-19 infected samples from Japan COVID-19 Task Force. Nature communications. 2022.08; 13 (1): 4830. ( PubMed , DOI )

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Ryota Sato, Daisuke Hasegawa, Narut Prasitlumkum, Miki Ueoka, Kazuki Nishida, Kunihiko Takahashi, Michitaka Nasu, Siddharth Dugar: Effect of IV High-Dose Vitamin C on Mortality in Patients With Sepsis: A Systematic Review and Meta-Analysis of Randomized Controlled Trials. Crit Care Med. 2021.12; 49 (12): 2121-2130. ( PubMed , DOI )

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Chie Kohno, Kayoko Kaneko, Kunihiko Takahashi, Yukihiro Ohya, Hiroshi Nakajima, Atsuko Murashima: Intrauterine exposure to immunosuppressants influences the development of postnatal allergic diseases. Allergy. 2021.09; 76 (9): 2890-2893. ( PubMed , DOI )

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Hideo Bannai, Juha Kärkkäinen, Dominik Köppl, Marcin Piątkowski: Constructing the Bijective and the Extended Burrows-Wheeler Transform in Linear Time 32nd Annual Symposium on Combinatorial Pattern Matching (CPM 2021). 2021.07; 7:1-7:16. ( DOI )

Masaru Ejima, Tsukasa Okamoto, Takafumi Suzuki, Tatsuhiko Anzai, Kunihiko Takahashi, Yasunari Miyazaki: Efficacy of treatment with corticosteroids for fibrotic hypersensitivity pneumonitis: a propensity score-matched cohort analysis. BMC Pulm Med. 2021.07; 21 (1): 243. ( PubMed , DOI )

Toshiki Fukasawa, Hayato Takahashi, Kunihiko Takahashi, Nanae Tanemura, Masayuki Amagai, Hisashi Urushihara: Risk of Stevens-Johnson syndrome and toxic epidermal necrolysis associated with anticonvulsants in a Japanese population: Matched case-control and cohort studies. Allergol Int. 2021.07; 70 (3): 335-342. ( PubMed , DOI )

Tatsuhiko Anzai, Takashi Yamauchi, Masaki Ozawa, Kunihiko Takahashi: A Generalized Structural Equation Model Approach to Long Working Hours and Near-Misses among Healthcare Professionals in Japan. Int J Environ Res Public Health. 2021.07; 18 (13): ( PubMed , DOI )

Saiki R, Momozawa Y, Nannya Y, Nakagawa MM, Ochi Y, Yoshizato T, Terao C, Kuroda Y, Shiraishi Y, Chiba K, Tanaka H, Niida A, Imoto S, Matsuda K, Morisaki T, Murakami Y, Kamatani Y, Matsuda S, Kubo M, Miyano S, Makishima H, Ogawa S: Combined landscape of single-nucleotide variants and copy number alterations in clonal hematopoiesis. Nature medicine. 2021.07; 27 (7): 1239-1249. ( PubMed , DOI )

Daisuke Kasugai, Masayuki Ozaki, Kazuki Nishida, Yukari Goto, Kunihiko Takahashi, Shigeyuki Matsui, Naoyuki Matsuda: Relative platelet reductions provide better pathophysiologic signatures of coagulopathies in sepsis. Sci Rep. 2021.07; 11 (1): 14033. ( PubMed , DOI )

Tatsuhiko Anzai, Takashi Yamauchi, Masaki Ozawa, Kunihiko Takahashi: A Generalized Structural Equation Model Approach to Long Working Hours and Near-Misses among Healthcare Professionals in Japan. Int J Environ Res Public Health. 2021.07; 18 (13): 7154. ( PubMed , DOI )

Ichihara K, Matsumoto A, Nishida H, Kito Y, Shimizu H, Shichino Y, Iwasaki S, Imami K, Ishihama Y, Nakayama KI: Combinatorial analysis of translation dynamics reveals eIF2 dependence of translation initiation at near-cognate codons Nucleic Acids Research. 2021.07; 49 (13): 7298-7317. ( PubMed , DOI )

Masaru Ejima, Tsukasa Okamoto, Takafumi Suzuki, Tatsuhiko Anzai, Kunihiko Takahashi, Yasunari Miyazaki: Efficacy of treatment with corticosteroids for fibrotic hypersensitivity pneumonitis: a propensity score-matched cohort analysis. BMC Pulm Med. 2021.07; 21 (1): 243. ( PubMed , DOI )

Kosugi Y, Uriu K, Suzuki N, Yamamoto K, Nagaoka S, Kimura I, Konno Y, Aso H, Willett BJ, Kobayashi T, Koyanagi Y, Ueda MT, Ito J, Sato K: Comprehensive Investigation on the Interplay between Feline APOBEC3Z3 Proteins and Feline Immunodeficiency Virus Vif Proteins. Journal of virology. 2021.06; 95 (13): e0017821. ( PubMed , DOI )

Daisuke Hasegawa, Ryota Sato, Narut Prasitlumkum, Kazuki Nishida, Kunihiko Takahashi, Tomoaki Yatabe, Osamu Nishida: Effect of Ultrashort-Acting β-Blockers on Mortality in Patients With Sepsis With Persistent Tachycardia Despite Initial Resuscitation: A Systematic Review and Meta-analysis of Randomized Controlled Trials. Chest. 2021.06; 159 (6): 2289-2300. ( PubMed , DOI )

Fujii Y, Sato Y, Suzuki H, Kakiuchi N, Yoshizato T, Lenis AT, Maekawa S, Yokoyama A, Takeuchi Y, Inoue Y, Ochi Y, Shiozawa Y, Aoki K, Yoshida K, Kataoka K, Nakagawa MM, Nannya Y, Makishima H, Miyakawa J, Kawai T, Morikawa T, Shiraishi Y, Chiba K, Tanaka H, Nagae G, Sanada M, Sugihara E, Sato TA, Nakagawa T, Fukayama M, Ushiku T, Aburatani H, Miyano S, Coleman JA, Homma Y, Solit DB, Kume H, Ogawa S: Molecular classification and diagnostics of upper urinary tract urothelial carcinoma. Cancer cell. 2021.06; 39 (6): 793-809.e8. ( PubMed , DOI )

Hideo Bannai, Shunsuke Inenaga, Neerja Mhaskar: Longest previous overlapping factor array Information Processing Letters. 2021.06; 168 106097. ( DOI )

Takahiro Mitsumura, Tsukasa Okamoto, Tsuyoshi Shirai, Yuki Iijima, Rie Sakakibara, Takayuki Honda, Masahiro Ishizuka, Junichi Aiboshi, Tomoya Tateishi, Meiyo Tamaoka, Hidenobu Shigemitsu, Hirokuni Arai, Yasuhiro Otomo, Shuji Tohda, Tatsuhiko Anzai, Kunihiko Takahashi, Shinsuke Yasuda, Yasunari Miyazaki: Predictors associated with clinical improvement of SARS-CoV-2 pneumonia. J Infect Chemother. 2021.06; 27 (6): 857-863. ( PubMed , DOI )

Ryota Sato, Daisuke Hasegawa, Natsumi T Hamahata, Swetha Narala, Kazuki Nishida, Kunihiko Takahashi, Tomoki Sempokuya, Ehab G Daoud: The predictive value of airway occlusion pressure at 100 msec (P0.1) on successful weaning from mechanical ventilation: A systematic review and meta-analysis. J Crit Care. 2021.06; 63 124-132. ( PubMed , DOI )

Takahiro Mitsumura, Tsukasa Okamoto, Tsuyoshi Shirai, Yuki Iijima, Rie Sakakibara, Takayuki Honda, Masahiro Ishizuka, Junichi Aiboshi, Tomoya Tateishi, Meiyo Tamaoka, Hidenobu Shigemitsu, Hirokuni Arai, Yasuhiro Otomo, Shuji Tohda, Tatsuhiko Anzai, Kunihiko Takahashi, Shinsuke Yasuda, Yasunari Miyazaki: Predictors associated with clinical improvement of SARS-CoV-2 pneumonia. J Infect Chemother. 2021.06; 27 (6): 857-863. ( PubMed , DOI )

Noriki Fujisato, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: The Parameterized Suffix Tray 12th International Conference on Algorithms and Complexity. 2021.05; 258-270. ( DOI )

Ho Namkoong , Ryuya Edahiro , Koichi Fukunaga , Yuya Shirai , Kyuto Sonehara , Hiromu Tanaka , Ho Lee , Takanori Hasegawa , Masahiro Kanai , Tatsuhiko Naito , Kenichi Yamamoto , Ryunosuke Saiki , Takayoshi Hyugaji , Eigo Shimizu , Kotoe Katayama , Kazuhisa Takahashi , Norihiro Harada , Toshio Naito , Makoto Hiki , Yasushi Matsushita , Haruhi Takagi , Ryousuke Aoki , Ai Nakamura , Sonoko Harada , Hitoshi Sasano , Hiroki Kabata , Katsunori Masaki , Hirofumi Kamata , Shinnosuke Ikemura , Shotaro Chubachi , Satoshi Okamori , Hideki Terai , Atsuho Morita , Takanori Asakura , Junichi Sasaki , Hiroshi Morisaki , Yoshifumi Uwamino , Kosaku Nanki , Yohei Mikami , Sho Uchida , Shunsuke Uno , Rino Ishihara , Yuta Matsubara , Tomoyasu Nishimura , Takanori Ogawa , Takashi Ishiguro , Taisuke Isono , Shun Shibata , Yuma Matsui , Chiaki Hosoda , Kenji Takano , Takashi Nishida , Yoichi Kobayashi , Yotaro Takaku , Noboru Takayanagi , Soichiro Ueda , Ai Tada , Masayoshi Miyawaki , Masaomi Yamamoto , Eriko Yoshida , Reina Hayashi , Tomoki Nagasaka , Sawako Arai , Yutaro Kaneko , Kana Sasaki , Etsuko Tagaya , Masatoshi Kawana , Ken Arimura , Kunihiko Takahashi , Tatsuhiko Anzai , Satoshi Ito , Akifumi Endo , Yuji Uchimura , Yasunari Miyazaki , Takayuki Honda , Tomoya Tateishi , Shuji Tohda , Naoya Ichimura , Kazunari Sonobe , Chihiro Sassa , Jun Nakajima , Yasushi Nakano , Yukiko Nakajima , Ryusuke Anan , Ryosuke Arai , Yuko Kurihara , Yuko Harada , Kazumi Nishio , Tetsuya Ueda , Masanori Azuma , Ryuichi Saito , Toshikatsu Sado , Yoshimune Miyazaki , Ryuichi Sato , Yuki Haruta , Tadao Nagasaki , Yoshinori Yasui , Yoshinori Hasegawa , Yoshikazu Mutoh , Tomonori Sato , Reoto Takei , Satoshi Hagimoto , Yoichiro Noguchi , Yasuhiko Yamano , Hajime Sasano , Sho Ota , Yasushi Nakamori , Kazuhisa Yoshiya , Fukuki Saito , Tomoyuki Yoshihara , Daiki Wada , Hiromu Iwamura , Syuji Kanayama , Shuhei Maruyama , Takashi Yoshiyama , Ken Ohta , Hiroyuki Kokuto , Hideo Ogata , Yoshiaki Tanaka , Kenichi Arakawa , Masafumi Shimoda , Takeshi Osawa , Hiroki Tateno , Isano Hase , Shuichi Yoshida , Shoji Suzuki , Miki Kawada , Hirohisa Horinouchi , Fumitake Saito , Keiko Mitamura , Masao Hagihara , Junichi Ochi , Tomoyuki Uchida , Rie Baba , Daisuke Arai , Takayuki Ogura , Hidenori Takahashi , Shigehiro Hagiwara , Genta Nagao , Shunichiro Konishi , Ichiro Nakachi , Koji Murakami , Mitsuhiro Yamada , Hisatoshi Sugiura , Hirohito Sano , Shuichiro Matsumoto , Nozomu Kimura , Yoshinao Ono , Hiroaki Baba , Yusuke Suzuki , Sohei Nakayama , Keita Masuzawa , Shinichi Namba , Ken Suzuki , Nobuyuki Hizawa , Takayuki Shiroyama , Satoru Miyawaki , Yusuke Kawamura , Akiyoshi Nakayama , Hirotaka Matsuo , Yuichi Maeda , Takuro Nii , Yoshimi Noda , Takayuki Niitsu , Yuichi Adachi , Takatoshi Enomoto , Saori Amiya , Reina Hara , Toshihiro Kis: Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan 2021.05;

Junji Morisawa, Takahiro Otani, Jo Nishino, Ryo Emoto, Kunihiko Takahashi, Shigeyuki Matsui: Semi-parametric empirical Bayes factor for genome-wide association studies. Eur J Hum Genet. 2021.05; 29 800-807. ( PubMed , DOI )

Zhao Peipei, Yang Meng, Zhu Guoliang, Zhao Bo, Wang Hong, Liu Hairong, Wang Xinzhu, Qi Jun, Yin Xin, Yu Lumin, Meng Yiwei, Li Zhipu, Zhang Lixin, Xia Xuekui: モリセリンS～U　Chaetomium brasiliense SD-596から単離した抗MRSA活性を持つ3種類の新規デプシドン類(Mollicellins S-U, three new depsidones from Chaetomium brasiliense SD-596 with anti-MRSA activities) The Journal of Antibiotics. 2021.05; 74 (5): 317-323. ( ichushi )

Yamaguchi K, Kasajima R, Takane K, Hatakeyama S, Shimizu E, Yamaguchi R, Katayama K, Arai M, Ishioka C, Iwama T, Kaneko S, Matsubara N, Moriya Y, Nomizu T, Sugano K, Tamura K, Tomita N, Yoshida T, Sugihara K, Nakamura Y, Miyano S, Imoto S, Furukawa Y, Ikenoue T: Application of targeted nanopore sequencing for the screening and determination of structural variants in patients with Lynch syndrome. Journal of human genetics. 2021.05; 66 (11): 1053-1060. ( PubMed , DOI )

Ochi Y, Yoshida K, Huang YJ, Kuo MC, Nannya Y, Sasaki K, Mitani K, Hosoya N, Hiramoto N, Ishikawa T, Branford S, Shanmuganathan N, Ohyashiki K, Takahashi N, Takaku T, Tsuchiya S, Kanemura N, Nakamura N, Ueda Y, Yoshihara S, Bera R, Shiozawa Y, Zhao L, Takeda J, Watatani Y, Okuda R, Makishima H, Shiraishi Y, Chiba K, Tanaka H, Sanada M, Takaori-Kondo A, Miyano S, Ogawa S, Shih LY: Clonal evolution and clinical implications of genetic abnormalities in blastic transformation of chronic myeloid leukaemia. Nature communications. 2021.05; 12 (1): 2833. ( PubMed , DOI )

Niida A, Mimori K, Shibata T, Miyano S: Modeling colorectal cancer evolution. Journal of human genetics. 2021.05; 66 (9): 869-878. ( PubMed , DOI )

Kayoko Hishinuma, Ritsuko Yamane, Ikuko Yokoo, Takahide Arimoto, Kunihiko Takahashi, Mikako Goto, Yoshiyuki Saito, Ken Nakajima, Atsuko Murashima, Masahiro Hayashi: Pregnancy outcome after first trimester exposure to domperidone-An observational cohort study. J Obstet Gynaecol Res. 2021.05; 47 (5): 1704-1710. ( PubMed , DOI )

Shiori Mitsuya, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Compressed Communication Complexity of Hamming Distance Algorithms. 2021.04; 14 (4): 116. ( DOI )

Hideaki Sato, Hidetoshi Nakamura, Yuki Nishida, Toru Shirahata, Sanehiro Yogi, Tomoe Akagami, Machika Soma, Kaiji Inoue, Mamoru Niitsu, Tomohiko Mio, Tatsuyuki Miyashita, Makoto Nagata, Satoshi Nakae, Yosuke Yamada, Shigeho Tanaka, Fuminori Katsukawa: Energy expenditure and physical activity in COPD by doubly labelled water method and an accelerometer. ERJ Open Res. 2021.04; 7 (2): ( PubMed , DOI )

Mitsuru Funakoshi, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Computing longest palindromic substring after single-character or block-wise edits Theoretical Computer Science. 2021.03; 859 116-133. ( DOI )

Yoshihiro Ishida, Nobuyuki Kakiuchi, Kenichi Yoshida, Yoshikage Inoue, Hiroyuki Irie, Tatsuki R Kataoka, Masahiro Hirata, Takeru Funakoshi, Shigeto Matsushita, Hiroo Hata, Hiroshi Uchi, Yuki Yamamoto, Yasuhiro Fujisawa, Taku Fujimura, Ryunosuke Saiki, Kengo Takeuchi, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Atsushi Otsuka, Satoru Miyano, Kenji Kabashima, Seishi Ogawa: Unbiased Detection of Driver Mutations in Extramammary Paget Disease. Clin Cancer Res. 2021.03; 27 (6): 1756-1765. ( PubMed , DOI )

Kazuyuki Shimada, Kenichi Yoshida, Yasuhiro Suzuki, Chisako Iriyama, Yoshikage Inoue, Masashi Sanada, Keisuke Kataoka, Masaaki Yuge, Yusuke Takagi, Shigeru Kusumoto, Yasufumi Masaki, Takahiko Ito, Yuichiro Inagaki, Akinao Okamoto, Yachiyo Kuwatsuka, Masahiro Nakatochi, Satoko Shimada, Hiroaki Miyoshi, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Satoru Miyano, Yusuke Shiozawa, Yasuhito Nannya, Asako Okabe, Kei Kohno, Yoshiko Atsuta, Koichi Ohshima, Shigeo Nakamura, Seishi Ogawa, Akihiro Tomita, Hitoshi Kiyoi: Frequent genetic alterations in immune checkpoint-related genes in intravascular large B-cell lymphoma. Blood. 2021.03; 137 (11): 1491-1502. ( PubMed , DOI )

Taeko Kaburagi, Genki Yamato, Norio Shiba, Kenichi Yoshida, Yusuke Hara, Ken Tabuchi, Yuichi Shiraishi, Kentaro Ohki, Manabu Sotomatsu, Hirokazu Arakawa, Hidemasa Matsuo, Akira Shimada, Tomohiko Taki, Nobutaka Kiyokawa, Daisuke Tomizawa, Keizo Horibe, Satoru Miyano, Takashi Taga, Souichi Adachi, Seishi Ogawa, Yasuhide Hayashi: Clinical significance of RAS pathway alterations in pediatric acute myeloid leukemia. Haematologica. 2021.03; Online ahead of print (3): 583-592. ( PubMed , DOI )

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Daisuke Kasugai, Akihiko Hirakawa, Masuyuki Ozaki, Kazuki Nishida, Takao Ikeda, Kunihiko Takahashi, Shigeyuki Matsui, Norimichi Uenishi: Maximum Norepinephrine Dosage Within 24 Hours as an Indicator of Refractory Septic Shock: A Retrospective Study. J Intensive Care Med. 2020.11; 35 (11): 1285-1289. ( PubMed , DOI )

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Natsumi Kikuchi, Diptarama Hendrian, Ryo Yoshinaka, Ayumi Shinohara: Computing Covers Under Substring Consistent Equivalence Relations 25th International Symposium on String Processing and Information Retrieva (SPIRE 2020). 2020.10; 131-146. ( DOI )

Kosuke Fujimoto, Yasumasa Kimura, Masaki Shimohigoshi, Takeshi Satoh, Shintaro Sato, Georg Tremmel, Miho Uematsu, Yunosuke Kawaguchi, Yuki Usui, Yoshiko Nakano, Tetsuya Hayashi, Koji Kashima, Yoshikazu Yuki, Kiyoshi Yamaguchi, Yoichi Furukawa, Masanori Kakuta, Yutaka Akiyama, Rui Yamaguchi, Sheila E Crowe, Peter B Ernst, Satoru Miyano, Hiroshi Kiyono, Seiya Imoto, Satoshi Uematsu: Metagenome Data on Intestinal Phage-Bacteria Associations Aids the Development of Phage Therapy against Pathobionts. Cell Host Microbe. 2020.09; 28 (3): 380-389.e9. ( PubMed , DOI )

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Kazuya Tsuruta, Dominik Köppl, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Grammar-compressed Self-index with Lyndon Words 情報処理学会論文誌数理モデル化と応用 (TOM). 2020.08; 13 (2): 84-92.

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Suetomi Risa, Ohta Yasuharu, Akiyama Masaru, Matsumura Takuro, Taguchi Akihiko, Yamamoto Kaoru, Kamatani Takashi, Tanizawa Yukio: アドレノメデュリンはオートクリンおよびパラクリン的に作用して小胞体ストレスから膵β細胞を保護する役割を果たす(Adrenomedullin has a cytoprotective role against endoplasmic reticulum stress for pancreatic β-cells in autocrine and paracrine manners) Journal of Diabetes Investigation. 2020.07; 11 (4): 823-833.

Hideto Takahashi, Seiji Yasumura, Kunihiko Takahashi, Tetsuya Ohira, Akira Ohtsuru, Sanae Midorikawa, Satoru Suzuki, Hiroki Shimura, Tetsuo Ishikawa, Akira Sakai, Shinichi Suzuki, Susumu Yokoya, Koichi Tanigawa, Hitoshi Ohto, Kenji Kamiya: Nested matched case control study for the Japan Fukushima Health Management Survey's first full-scale (second-round) thyroid examination. Medicine (Baltimore). 2020.07; 99 (27): e20440. ( PubMed , DOI )

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Satoshi Kobayashi, Diptarama Hendrian, Ryo Yoshinaka, Ayumi Shinohara: Fast and Linear-Time String Matching Algorithms Based on the Distances of q-Gram Occurrences The 18th International Symposium on Experimental Algorithms (SEA 2020). 2020.06; 13:1-13:13.

Masaki K, Miyata J, Kamatani T, Tanosaki T, Mochimaru T, Kabata H, Suzuki Y, Asano K, Betsuyaku T, Fukunaga K: Risk factors for poor adherence to inhaled corticosteroid therapy in patients with moderate to severe asthma. Asian Pacific journal of allergy and immunology. 2020.06; 41 (2): 113-120. ( PubMed , DOI )

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Mitsuru Funakoshi, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda, Ayumi Shinohara: Detecting k-(Sub-)Cadences and Equidistant Subsequence Occurrences 31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020). 2020.06; 12:1-12:11. ( DOI )

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Isidro Cortés-Ciriano, Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L Jung, Lixing Yang, Dmitry Gordenin, Leszek J Klimczak, Cheng-Zhong Zhang, David S Pellman, Peter J Park, PCAWG Consortium (Satoru Miyano, et al.): Publisher Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nat Genet. 2020.05; Online ahead of print ( PubMed , DOI )

Kiichi Watanabe, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Fast Algorithms for the Shortest Unique Palindromic Substring Problem on Run-Length Encoded Strings Theory of Computing Systems. 2020.05; ( DOI )

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Minako Mori, Asuka Hira, Kenichi Yoshida, Hideki Muramatsu, Yusuke Okuno, Yuichi Shiraishi, Michiko Anmae, Jun Yasuda, Shu Tadaka, Kengo Kinoshita, Tomoo Osumi, Yasushi Noguchi, Souichi Adachi, Ryoji Kobayashi, Hiroshi Kawabata, Kohsuke Imai, Tomohiro Morio, Kazuo Tamura, Akifumi Takaori-Kondo, Masayuki Yamamoto, Satoru Miyano, Seiji Kojima, Etsuro Ito, Seishi Ogawa, Keitaro Matsuo, Hiromasa Yabe, Miharu Yabe, Minoru Takata: Pathogenic mutations identified by a multimodality approach in 117 Japanese Fanconi anemia patients Haematologica. 2020.04; 105 (4): 1166-1167. ( PubMed , DOI )

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Yao-Zhong Zhang, Arda Akdemir, Georg Tremmel, Seiya Imoto, Satoru Miyano, Tetsuo Shibuya, Rui Yamaguchi: Nanopore basecalling from a perspective of instance segmentation. BMC Bioinformatics. 2020.04; 21 (Suppl 3): 136. ( PubMed , DOI )

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Hideo Bannai, Travis Gagie, Tomohiro I: Refining the r-index Theoretical Computer Science. 2020.04; 812 96-108. ( DOI )

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Diptarama Hendrian: Generalized Dictionary Matching under Substring Consistent Equivalence Relations 14th International Conference and Workshop on Algorithms and Computation (WALCOM 2020). 2020.03; 120-132. ( DOI )

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Kazuya Tsuruta, Dominik Köppl, Shunsuke Kanda, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: c-Trie++: A Dynamic Trie Tailored for Fast Prefix Searches. 2020 Data Compression Conference (DCC). 2020.03; 243-252. ( DOI )

Tatsuhiko Anzai, Kunihiko Takahashi, Michiko Watanabe, Mayumi Mochizuki, Atsuko Murashima: Adverse event reports in patients taking psychiatric medication during pregnancy from spontaneous reports in Japan and the United States: an approach using latent class analysis. BMC Psychiatry. 2020.03; 20 (1): 118. ( PubMed , DOI )

Ayako Maeda-Minami, Tetsuhiro Yoshino, Kotoe Katayama, Yuko Horiba, Hiroaki Hikiami, Yutaka Shimada, Takao Namiki, Eiichi Tahara, Kiyoshi Minamizawa, Shinichi Muramatsu, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Hideki Mima, Masaru Mimura, Tomonori Nakamura, Kenji Watanabe: Discrimination of prediction models between cold-heat and deficiency-excess patterns. Complement Ther Med. 2020.03; 49 102353. ( PubMed , DOI )

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Kadir C Akdemir, Victoria T Le, Sahaana Chandran, Yilong Li, Roel G Verhaak, Rameen Beroukhim, Peter J Campbell, Lynda Chin, Jesse R Dixon, P Andrew Futreal, ,PCAWG Consortium (Satoru Miyano, et al.): Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer. Nat Genet. 2020.03; 52 (3): 294-305. ( PubMed , DOI )

Bernardo Rodriguez-Martin, Eva G Alvarez, Adrian Baez-Ortega, Jorge Zamora, Fran Supek, Jonas Demeulemeester, Martin Santamarina, Young Seok Ju, Javier Temes, Daniel Garcia-Souto, Harald Detering, Yilong Li, Jorge Rodriguez-Castro, Ana Dueso-Barroso, Alicia L Bruzos, Stefan C Dentro, Miguel G Blanco, Gianmarco Contino, Daniel Ardeljan, Marta Tojo, Nicola D Roberts, Sonia Zumalave, Paul A W Edwards, Joachim Weischenfeldt, Montserrat Puiggròs, Zechen Chong, Ken Chen, Eunjung Alice Lee, Jeremiah A Wala, Keiran Raine, Adam Butler, Sebastian M Waszak, Fabio C P Navarro, Steven E Schumacher, Jean Monlong, Francesco Maura, Niccolo Bolli, Guillaume Bourque, Mark Gerstein, Peter J Park, David C Wedge, Rameen Beroukhim, David Torrents, Jan O Korbel, Inigo Martincorena, Rebecca C Fitzgerald, Peter Van Loo, Haig H Kazazian, Kathleen H Burns, Peter J Campbell, Jose M C Tubio, PCAWG Consortium (Satoru Miyano, et al.): Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition. Nat Genet. 2020.03; 52 (3): 306-319. ( PubMed , DOI )

Sergei Yakneen, Sebastian M Waszak, , Michael Gertz, Jan O Korbel, PCAWG Consortium (Satoru Miyano, et al.): Butler enables rapid cloud-based analysis of thousands of human genomes. Nat Biotechnol. 2020.03; 38 (3): 288-292. ( PubMed , DOI )

Takanori Hasegawa, Rui Yamaguchi, Atsushi Niida, Satoru Miyano, Seiya Imoto: Ensemble smoothers for inference of hidden states and parameters in combinatorial regulatory model J Frankl Inst. 2020.03; 357 (5): 2916-2933. ( DOI )

Kodama M, Oshikawa K, Shimizu H, Yoshioka S, Takahashi M, Izumi Y, Bamba T, Tateishi C, Tomonaga T, Matsumoto M, Nakayama KI: A shift in glutamine nitrogen metabolism contributes to malignant progression of cancer Nature Communications. 2020.03; 11 (1320):

Takaaki Nishimoto, Tomohiro I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Dynamic index and LZ factorization in compressed space Discrete Applied Mathematics. 2020.03; 274 116-129. ( DOI )

Oshikawa K, Matsumoto M, Kodama M, Shimizu H, Nakayama KI: A fail-safe system to prevent oncogenesis by senescence is targeted by SV40 small T antigen. Oncogene. 2020.03; 39 (10): 2170-2186. ( PubMed , DOI )

Hiroshi Takagi, Daisuke Hagiwara, Tomoko Handa, Mariko Sugiyama, Takeshi Onoue, Taku Tsunekawa, Yoshihiro Ito, Shintaro Iwama, Motomitsu Goto, Hidetaka Suga, Ryoichi Banno, Kunihiko Takahashi, Shigeyuki Matsui, Hiroshi Arima: Diagnosis of central diabetes insipidus using a vasopressin radioimmunoassay during hypertonic saline infusion. Endocr J. 2020.03; 67 (3): 267-274. ( PubMed , DOI )

Sato N, Kakuta M, Hasegawa T, Yamaguchi R, Uchino E, Kobayashi W, Sawada K, Tamura Y, Tokuda I, Murashita K, Nakaji S, Imoto S, Yanagita M, Okuno Y: Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers. NPJ biofilms and microbiomes. 2020.03; 6 (1): 11. ( PubMed , DOI )

Tatsuhiko Anzai, Kunihiko Takahashi, Michiko Watanabe, Mayumi Mochizuki, Atsuko Murashima: Adverse event reports in patients taking psychiatric medication during pregnancy from spontaneous reports in Japan and the United States: an approach using latent class analysis. BMC Psychiatry. 2020.03; 20 (1): 118. ( PubMed , DOI )

Akihiro Fujimoto, Masashi Fujita, Takanori Hasegawa, Jing Hao Wong, Kazuhiro Maejima, Aya Oku-Sasaki, Kaoru Nakano, Yuichi Shiraishi, Satoru Miyano, Go Yamamoto, Kiwamu Akagi, Seiya Imoto, Hidewaki Nakagawa: Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types. Genome Res. 2020.03; 30 (3): 334-346. ( PubMed , DOI )

Makoto Hirata, Naofumi Asano, Kotoe Katayama, Akihiko Yoshida, Yusuke Tsuda, Masaya Sekimizu, Sachiyo Mitani, Eisuke Kobayashi, Motokiyo Komiyama, Hiroyuki Fujimoto, Takahiro Goto, Yukihide Iwamoto, Norifumi Naka, Shintaro Iwata, Yoshihiro Nishida, Toru Hiruma, Hiroaki Hiraga, Hirotaka Kawano, Toru Motoi, Yoshinao Oda, Daisuke Matsubara, Masashi Fujita, Tatsuhiro Shibata, Hidewaki Nakagawa, Robert Nakayama, Tadashi Kondo, Seiya Imoto, Satoru Miyano, Akira Kawai, Rui Yamaguchi, Hitoshi Ichikawa, Koichi Matsuda: Publisher Correction: Integrated exome and RNA sequencing of dedifferentiated liposarcoma. Nat Commun. 2020.02; 11 (1): 1024. ( PubMed , DOI )

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Yilong Li, Nicola D Roberts, Jeremiah A Wala, Ofer Shapira, Steven E Schumacher, Kiran Kumar, Ekta Khurana, Sebastian Waszak, Jan O Korbel, James E Haber, Marcin Imielinski, , Joachim Weischenfeldt, Rameen Beroukhim, Peter J Campbell, PCAWG Consortium (Satoru Miyano, et al.): Patterns of somatic structural variation in human cancer genomes. Nature. 2020.02; 578 (7793): 112-121. ( PubMed , DOI )

Lake-Ee Quek, James R Krycer, Satoshi Ohno, Katsuyuki Yugi, Daniel J Fazakerley, Richard Scalzo, Sarah D Elkington, Ziwei Dai, Akiyoshi Hirayama, Satsuki Ikeda, Futaba Shoji, Kumi Suzuki, Jason W Locasale, Tomoyoshi Soga, David E James, Shinya Kuroda: Dynamic 13C Flux Analysis Captures the Reorganization of Adipocyte Glucose Metabolism in Response to Insulin. iScience. 2020.02; 23 (2): 100855. ( PubMed , DOI )

Tasuku Fujii, Yasuyuki Shibata, Yasutaka Ban, Akira Shitaokoshi, Kunihiko Takahashi, Shigeyuki Matsui, Kimitoshi Nishiwaki: A single paravertebral injection via a needle vs. a catheter for the spreading to multiple intercostal levels: a randomized controlled trial. J Anesth. 2020.02; 34 (1): 72-78. ( PubMed , DOI )

Sergei Yakneen, Sebastian M Waszak, Michael Gertz, Jan O Korbel, PCAWG Consortium (Satoru Miyano, et al.): Publisher Correction: Butler enables rapid cloud-based analysis of thousands of human genomes. Nat Biotechnol. 2020.02; Online ahead of print. ( PubMed , DOI )

Yiqun Zhang, Fengju Chen, Nuno A Fonseca, Yao He, Masashi Fujita, Hidewaki Nakagawa, Zemin Zhang, Alvis Brazma, Chad J Creighton, PCAWG Consortium (Satoru Miyano, et al.): High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations. Nat Commun. 2020.02; 11 (1): 736. ( PubMed , DOI )

Lina Sieverling, Chen Hong, Sandra D Koser, Philip Ginsbach, Kortine Kleinheinz, Barbara Hutter, Delia M Braun, Isidro Cortés-Ciriano, Ruibin Xi, Rolf Kabbe, Peter J Park, Roland Eils, Matthias Schlesner, , Benedikt Brors, Karsten Rippe, David T W Jones, Lars Feuerbach, PCAWG Consortium (Satoru Miyano, et al.): Genomic footprints of activated telomere maintenance mechanisms in cancer. Nat Commun. 2020.02; 11 (1): 733. ( PubMed , DOI )

非侵襲検査と基礎医学・工学との融合 敵対的生成ネットワークによる心電図雑音評価効果の改善 2020.02; 40 (Suppl.2): S-30. ( ichushi )

自動体外式除細動器による除細動についてのコンピュータシミュレーションを用いた研究(Study on defibrillation of automatic external defibrillator using computer simulation) 2020.02; 40 (Suppl.2): S-54. ( ichushi )

過剰なTRPM4チャネルの活性が伝導速度とAP形状に変化を及ぼす可能性の検討 コンピュータシミュレーション研究(Excessive TRPM4 channel activity may change conduction velocities and AP shapes: a computer simulation study) 2020.02; 40 (Suppl.2): S-52. ( ichushi )

Jarno Alanko, Hideo Bannai, Bastien Cazaux, Pierre Peterlongo, Jens Stoye: Finding all maximal perfect haplotype blocks in linear time Algorithms for Molecular Biology. 2020.02; 15 (1): ( DOI )

Masato Yoshihara, Hiroaki Kajiyama, Satoshi Tamauchi, Shohei Iyoshi, Akira Yokoi, Shiro Suzuki, Michiyasu Kawai, Tetsuro Nagasaka, Kunihiko Takahashi, Shigeyuki Matsui, Fumitaka Kikkawa: Prognostic impact of pelvic and para-aortic lymphadenectomy on clinically-apparent stage I primary mucinous epithelial ovarian carcinoma: a multi-institutional study with propensity score-weighted analysis. Jpn J Clin Oncol. 2020.02; 50 (2): 145-151. ( PubMed , DOI )

Yuma Yasuda, Mitsuaki Nishikimi, Kazuki Nishida, Kunihiko Takahashi, Atsushi Numaguchi, Michiko Higashi, Shigeyuki Matsui, Naoyuki Matsuda: Relationship Between Serum Norepinephrine Levels at ICU Admission and the Risk of ICU-Acquired Delirium: Secondary Analysis of the Melatonin Evaluation of Lowered Inflammation of ICU Trial. Crit Care Explor. 2020.02; 2 (2): e0082. ( PubMed , DOI )

Pan-cancer analysis of whole genomes. Nature. 2020.02; 578 (7793): 82-93. ( PubMed , DOI )

Davaajav Jargalsaikhan, Diptarama Hendrian, Ryo Yoshinaka, Ayumi Shinohara: Parallel duel-and-sweep algorithm for the order-preserving pattern matching The 46th International Conference on Current Trends in Theory and Practice of Computer Science (SOFSEM 2020). 2020.01; 211-222. ( DOI )

Nobuyuki Kakiuchi, Kenichi Yoshida, Motoi Uchino, Takako Kihara, Kotaro Akaki, Yoshikage Inoue, Kenji Kawada, Satoshi Nagayama, Akira Yokoyama, Shuji Yamamoto, Minoru Matsuura, Takahiro Horimatsu, Tomonori Hirano, Norihiro Goto, Yasuhide Takeuchi, Yotaro Ochi, Yusuke Shiozawa, Yasunori Kogure, Yosaku Watatani, Yoichi Fujii, Soo Ki Kim, Ayana Kon, Keisuke Kataoka, Tetsuichi Yoshizato, Masahiro M Nakagawa, Akinori Yoda, Yasuhito Nanya, Hideki Makishima, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Masashi Sanada, Eiji Sugihara, Taka-Aki Sato, Takashi Maruyama, Hiroyuki Miyoshi, Makoto Mark Taketo, Jun Oishi, Ryosaku Inagaki, Yutaka Ueda, Shinya Okamoto, Hideaki Okajima, Yoshiharu Sakai, Takaki Sakurai, Hironori Haga, Seiichi Hirota, Hiroki Ikeuchi, Hiroshi Nakase, Hiroyuki Marusawa, Tsutomu Chiba, Osamu Takeuchi, Satoru Miyano, Hiroshi Seno, Seishi Ogawa: Frequent mutations that converge on the NFKBIZ pathway in ulcerative colitis. Nature. 2020.01; 577 (7789): 260-265. ( PubMed , DOI )

Masataka Taguchi, Hiroyuki Mishima, Yusuke Shiozawa, Chisa Hayashida, Akira Kinoshita, Yasuhito Nannya, Hideki Makishima, Makiko Horai, Masatoshi Matsuo, Shinya Sato, Hidehiro Itonaga, Takeharu Kato, Hiroaki Taniguchi, Daisuke Imanishi, Yoshitaka Imaizumi, Tomoko Hata, Motoi Takenaka, Yukiyoshi Moriuchi, Yuichi Shiraishi, Satoru Miyano, Seishi Ogawa, Koh-Ichiro Yoshiura, Yasushi Miyazaki: Genome analysis of myelodysplastic syndromes among atomic bomb survivors in Nagasaki. Haematologica. 2020.01; 105 (2): 358-365. ( PubMed , DOI )

Ryu Wakimoto, Satoshi Kobayashi, Yuki Igarashi, Davaajav Jargalsaikhan, Diptarama Hendrian, Ryo Yoshinaka, Ayumi Shinohara: AOBA: An Online Benchmark tool for Algorithms in stringology Proceedings of the SOFSEM 2020 Student Research Forum. 2020.01; 1-12.

Katsuhito Nakashima, Diptarama Hendrian, Ryo Yoshinaka, Ayumi Shinohara: An Extension of Linear-size Suffix Tries for Parameterized Strings Proceedings of the SOFSEM 2020 Student Research Forum. 2020.01; 97-108.

Hasegawa Takanori, Yamaguchi Rui, Niida Atsushi, Miyano Satoru, Imoto Seiya: Ensemble smoothers for inference of hidden states and parameters in combinatorial regulatory model. JOURNAL OF THE FRANKLIN INSTITUTE-ENGINEERING AND APPLIED MATHEMATICS. 2020; 357 (5): 2916-2933. ( DOI )

Dominik Köppl, Daiki Hashimoto, Diptarama Hendrian, Ayumi Shinohara: In-Place Bijective Burrows-Wheeler Transforms. CPM. 2020; 21-15. ( DOI )

Nishimura A, Hirabayashi S, Hasegawa D, Yoshida K, Shiraishi Y, Ashiarai M, Hosoya Y, Fujiwara T, Harigae H, Miyano S, Ogawa S, Manabe A: Acquisition of monosomy 7 and a RUNX1 mutation in Pearson syndrome Pediatric Blood and Cancer. 2020; 68 (2): e28799. ( PubMed , DOI )

Kohei Yamada, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Faster STR-EC-LCS Computation SOFSEM 2020: Theory and Practice of Computer Science. 2020; 125-135. ( DOI )

Takuya Mieno, Yuki Kuhara, Tooru Akagi, Yuta Fujishige, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Minimal Unique Substrings and Minimal Absent Words in a Sliding Window SOFSEM 2020: Theory and Practice of Computer Science. 2020; 148-160. ( DOI )

Yuki Nishida, Shigeho Tanaka, Satoshi Nakae, Yosuke Yamada, Katsutaro Morino, Keiko Kondo, Kaori Nishida, Akiko Ohi, Mika Kurihara, Masaya Sasaki, Satoshi Ugi, Hiroshi Maegawa, Naoyuki Ebine, Satoshi Sasaki, Fuminori Katsukawa: Validity of the Use of a Triaxial Accelerometer and a Physical Activity Questionnaire for Estimating Total Energy Expenditure and Physical Activity Level among Elderly Patients with Type 2 Diabetes Mellitus: CLEVER-DM Study. Ann Nutr Metab. 2020; 76 (1): 62-72. ( PubMed , DOI )

Noriaki Sato, Masanori Kakuta, Eiichiro Uchino, Takanori Hasegawa, Ryosuke Kojima, Wataru Kobayashi, Kaori Sawada, Yoshihiro Tamura, Itoyo Tokuda, Seiya Imoto, Shigeyuki Nakaji, Koichi Murashita, Motoko Yanagita, Yasushi Okuno: The relationship between cigarette smoking and the tongue microbiome in an East Asian population. J Oral Microbiol. 2020; 12 (1): 1742527. ( PubMed , DOI )

Takanori Hasegawa, Rui Yamaguchi, Masanori Kakuta, Kaori Sawada, Kenichi Kawatani, Koichi Murashita, Shigeyuki Nakaji, Seiya Imoto: Prediction of blood test values under different lifestyle scenarios using time-series electronic health record. PLoS One. 2020; 15 (3): e0230172. ( PubMed , DOI )

Atsushi Niida, Takanori Hasegawa, Hideki Innan, Tatsuhiro Shibata, Koshi Mimori, Satoru Miyano: A unified simulation model for understanding the diversity of cancer evolution. PeerJ. 2020; 8 (4): e8842. ( PubMed , DOI )

Tomoko Saito, Atsushi Niida, Ryutaro Uchi, Hidenari Hirata, Hisateru Komatsu, Shotaro Sakimura, Shuto Hayashi, Sho Nambara, Yosuke Kuroda, Shuhei Ito, Hidetoshi Eguchi, Takaaki Masuda, Keishi Sugimachi, Taro Tobo, Haruto Nishida, Tsutomu Daa, Kenichi Chiba, Yuichi Shiraishi, Tetsuichi Yoshizato, Masaaki Kodama, Tadayoshi Okimoto, Kazuhiro Mizukami, Ryo Ogawa, Kazuhisa Okamoto, Mitsutaka Shuto, Kensuke Fukuda, Yusuke Matsui, Teppei Shimamura, Takanori Hasegawa, Yuichiro Doki, Satoshi Nagayama, Kazutaka Yamada, Mamoru Kato, Tatsuhiro Shibata, Masaki Mori, Hiroyuki Aburatani, Kazunari Murakami, Yutaka Suzuki, Seishi Ogawa, Satoru Miyano, Koshi Mimori: A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer. Nat Commun. 2020; 9 (1): 2884. ( PubMed , DOI )

Sunao Shimizu, Junsei Mimura, Takanori Hasegawa, Eigo Shimizu, Seiya Imoto, Michiko Tsushima, Shuya Kasai, Hiromi Yamazaki, Yusuke Ushida, Hiroyuki Suganuma, Hirofumi Tomita, Masayuki Yamamoto, Shigeyuki Nakaji, Ken Itoh: Association of single nucleotide polymorphisms in the NRF2 promoter with vascular stiffness with aging. PLoS One. 2020; 15 (8): e0236834. ( PubMed , DOI )

Sato Yasuyoshi, Wada Ikuo, Odaira Kosuke, Hosoi Akihiro, Kobayashi Yukari, Nagaoka Koji, Karasaki Takahiro, Matsushita Hirokazu, Yagi Koichi, Yamashita Hiroharu, Fujita Masashi, Watanabe Shuichi, Kamatani Takashi, Miya Fuyuki, Mineno Junichi, Nakagawa Hidewaki, Tsunoda Tatsuhiko, Takahashi Shunji, Seto Yasuyuki, Kakimi Kazuhiro: Integrative immunogenomic analysis of gastric cancer dictates novel immunological classification and the functional status of tumor-infiltrating cells CLINICAL & TRANSLATIONAL IMMUNOLOGY. 2020; 9 (10): e1194. ( PubMed , DOI )

Yuto Nakashima, Takuya Takagi, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: On the size of the smallest alphabet for Lyndon trees Theoretical Computer Science. 2019.11; 792 131-143. ( DOI )

Takuya Takagi, Shunsuke Inenaga, Hiroki Arimura, Dany Breslauer, Diptarama Hendrian: Fully-Online Suffix Tree and Directed Acyclic Word Graph Construction for Multiple Texts Algorithmica. 2019.10; 82 (5): 1346-1377. ( DOI )

Kaizaburo Chubachi, Diptarama Hendrian, Ryo Yoshinaka, Ayumi Shinohara: Query Learning Algorithm for Residual Symbolic Finite Automata The Tenth International Symposium on Games, Automata, Logics, and Formal Verification, GandALF 2019. 2019.09; 140-153. ( DOI )

Single-channel ECG suitable for ECG-derived respiration 2019.08; 5 (5): 055002. ( DOI )

Shimizu H, Nakayama KI: A 23 gene-based molecular prognostic score precisely predicts overall survival of breast cancer patients. EBioMedicine. 2019.08; 46 150-159. ( PubMed , DOI )

Satoshi Kobayashi, Diptarama Hendrian, Ryo Yoshinaka, Ayumi Shinohara: An improvement of the Franek-Jennings-Smyth pattern matching algorithm Prague Stringology Conference 2019, PSC 2019. 2019.08; 56-68.

Diptarama Hendrian, Takuya Takagi, Shunsuke Inenaga: Online Algorithms for Constructing Linear-Size Suffix Trie 30th Annual Symposium on Combinatorial Pattern Matching, CPM 2019. 2019.06; 30:1-30:19. ( DOI )

Rate-oriented trans-omics: integration of multiple omic data on the basis of reaction kinetics 2019.06; 15 109-120.

Yoshiya Tanaka, Hideto Kameda, Saito Kazuyoshi, Yuko Kaneko, Eiichi Tanaka, Shinsuke Yasuda, Naoto Tamura, Keishi Fujio, Takao Fujii, Toshihisa Kojima, Tatsuhiko Anzai, Yoshihisa Fujino, Shinya Matsuda, Hitoshi Kohsaka: FACTORS THAT AFFECT THE RESPONSE TO TOCILIZUMAB WITH REGARD TO WORK PRODUCTIVITY IN PATIENTS WITH RHEUMATOID ARTHRITIS: A 2-YEAR FOLLOW-UP OF THE FIRST ACT-SC STUDY Annals of Rheumatic Diseases. 2019.06; 78 ( DOI )

Diptarama Hendrian, Yohei Ueki, Kazuyuki Narisawa, Ryo Yoshinaka, Ayumi Shinohara: Permuted Pattern Matching Algorithms on Multi-Track Strings. Algorithms. 2019.04; 12 (4): 73:1-73:20. ( DOI )

Muto Y, Moroishi T, Ichihara K, Nishiyama M, Shimizu H, Eguchi H, Moriya K, Koike K, Mimori K, Mori M, Katayama Y, Nakayama KI: Disruption of FBXL5-mediated cellular iron homeostasis promotes liver carcinogenesis Journal of Experimental Medicine. 2019.04; 216 (4): 950-965. ( PubMed , DOI )

Hirofumi Aso, Jumpei Ito, Yoshio Koyanagi, Kei Sato: Comparative description of the expression profile of interferon-stimulated genes in multiple cell lineages targeted by HIV-1 infection Frontiers in Microbiology. 2019.03; 10 429. ( PubMed , DOI )

深層学習による心房細動の検出(Detect Atrial Fibrillation Using Deep Learning) 2019.03; 39 (Suppl.1): S-14. ( ichushi )

A Bayesian model integration for mutation calling through data partitioning 2019.03; 35 (21): 4247-4254. ( PubMed , DOI )

Shimizu H, Takeishi S, Nakatsumi H, Nakayama KI: Prevention of cancer dormancy by Fbxw7 ablation eradicates disseminated tumor cells. JCI insight. 2019.02; 4 (4): ( PubMed , DOI )

Goto Shinichi, Kimura Mai, Katsumata Yoshinori, Goto Shinya, Kamatani Takashi, Ichihara Genki, Ko Seien, Sasaki Junichi, Fukuda Keiichi, Sano Motoaki: Artificial intelligence to predict needs for urgent revascularization from 12-leads electrocardiography in emergency patients PLOS ONE. 2019.01; 14 (1): e0210103. ( PubMed , DOI )

Nakamura, T; Nishi, M; Rikitake, M; Koga, D; Eto, J; Tajima, D; Toda, S; Matsuo, M: A case of subacute combined degeneration of the spinal cord due to folic acid and copper deficiency BRAIN & DEVELOPMENT. 2019.01; 41 (1): 111-115. ( PubMed , DOI )

Yoshiaki Minakata, Takashi Motegi, Jun Ueki, Yasuhiro Gon, Shuhei Nakamura, Tatsuhiko Anzai, Kazuto Hirata, Masakazu Ichinose: Effect of tiotropium/olodaterol on sedentary and active time in patients with COPD: post hoc analysis of the VESUTO study Int J Chron Obstruct Pulmon Dis. 2019; 14 1789-1801. ( PubMed , DOI )

Tatsuhiko Anzai, Kunihiko Takahashi, Michiko Watanabe: Adverse reaction reports of neuroleptic malignant syndrome induced by atypical antipsychotic agents in the Japanese Adverse Drug Event Report (JADER) database. Psychiatry Clin. Neurosci.. 2019; 73 (1): 27-33. ( PubMed , DOI )

Hideo Bannai, Juha Kärkkäinen, Dominik Köppl, Marcin Piatkowski: Indexing the Bijective BWT. 30th Annual Symposium on Combinatorial Pattern Matching, CPM 2019, June 18-20, 2019, Pisa, Italy.. 2019; 17:1-17:14. ( DOI )

Ryo Sugahara, Yuto Nakashima, Shunsuke Inenaga,Array, Masayuki Takeda: Computing Runs on a Trie. 30th Annual Symposium on Combinatorial Pattern Matching, CPM 2019, June 18-20, 2019, Pisa, Italy.. 2019; 23:1-23:11. ( DOI )

Noriki Fujisato, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: The Parameterized Position Heap of a Trie. Algorithms and Complexity - 11th International Conference, CIAC 2019, Rome, Italy, May 27-29, 2019, Proceedings. 2019; 237-248. ( DOI )

Yuki Urabe, Yuto Nakashima, Shunsuke Inenaga,Array, Masayuki Takeda: On the Size of Overlapping Lempel-Ziv and Lyndon Factorizations. 30th Annual Symposium on Combinatorial Pattern Matching, CPM 2019, June 18-20, 2019, Pisa, Italy.. 2019; 29:1-29:11. ( DOI )

Isamu Furuya, Takuya Takagi, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Takuya Kida: MR-RePair: Grammar Compression Based on Maximal Repeats. Data Compression Conference, DCC 2019, Snowbird, UT, USA, March 26-29, 2019. 2019; 508-517. ( DOI )

Mitsuru Funakoshi, Yuto Nakashima, Shunsuke Inenaga,Array, Masayuki Takeda: Faster Queries for Longest Substring Palindrome After Block Edit. 30th Annual Symposium on Combinatorial Pattern Matching, CPM 2019, June 18-20, 2019, Pisa, Italy.. 2019; 27:1-27:13. ( DOI )

Golnaz Badkobeh, Hideo Bannai, Maxime Crochemore, Tomohiro I, Shunsuke Inenaga, Shiho Sugimoto: k-Abelian Pattern Matching: Revisited, Corrected, and Extended. Prague Stringology Conference 2019, Prague, Czech Republic, August 26-28, 2019.. 2019; 29-40.

Mitsuru Funakoshi, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Computing Maximal Palindromes and Distinct Palindromes in a Trie. Prague Stringology Conference 2019, Prague, Czech Republic, August 26-28, 2019.. 2019; 3-15.

Kiichi Watanabe, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Shortest Unique Palindromic Substring Queries on Run-Length Encoded Strings. Combinatorial Algorithms - 30th International Workshop, IWOCA 2019, Pisa, Italy, July 23-25, 2019, Proceedings. 2019; 430-441. ( DOI )

Jarno Alanko, Hideo Bannai, Bastien Cazaux, Pierre Peterlongo, Jens Stoye: Finding All Maximal Perfect Haplotype Blocks in Linear Time. 19th International Workshop on Algorithms in Bioinformatics, WABI 2019, September 8-10, 2019, Niagara Falls, NY, USA.. 2019; 8:1-8:9. ( DOI )

Takahiro Otani, Kunihiko Takahashi, Ayano Takeuchi, Mari Asami: Comparison of Spatial Interpolation Methods based on Exposure Assessments of Air Pollutants: A Case Study on Nuclear Substances in Fukushima. Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies. 2019; 5 415-421. ( DOI )

Takuya Mieno, Dominik Köppl, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Compact Data Structures for Shortest Unique Substring Queries String Processing and Information Retrieval. 2019; 107-123. ( DOI )

Noriki Fujisato, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Direct Linear Time Construction of Parameterized Suffix and LCP Arrays for Constant Alphabets String Processing and Information Retrieval. 2019; 382-391. ( DOI )

Yuta Fujishige, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: An Improved Data Structure for Left-Right Maximal Generic Words Problem 30th International Symposium on Algorithms and Computation (ISAAC 2019). 2019; 40:1-40:12. ( DOI )

Kazuki Kai, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda, Tomasz Kociumaka: On Longest Common Property Preserved Substring Queries String Processing and Information Retrieval. 2019; 162-174. ( DOI )

Yuki Nishida, Satoshi Nakae, Yosuke Yamada, Emi Kondo, Miwa Yamaguchi, Hiroyuki Shirato, Hirohiko Hirano, Satoshi Sasaki, Shigeho Tanaka, Fuminori Katsukawa: Validity of One-Day Physical Activity Recall for Estimating Total Energy Expenditure in Elderly Residents at Long-Term Care Facilities: CLinical EValuation of Energy Requirements Study (CLEVER Study). J Nutr Sci Vitaminol (Tokyo). 2019; 65 (2): 148-156. ( PubMed , DOI )

Katsutaro Morino, Keiko Kondo, Shigeho Tanaka, Yuki Nishida, Satoshi Nakae, Yosuke Yamada, Satoshi Ugi, Keiko Fuse, Itsuko Miyazawa, Akiko Ohi, Kaori Nishida, Mika Kurihara, Masaya Sasaki, Naoyuki Ebine, Satoshi Sasaki, Fuminori Katsukawa, Hiroshi Maegawa: Total energy expenditure is comparable between patients with and without diabetes mellitus: Clinical Evaluation of Energy Requirements in Patients with Diabetes Mellitus (CLEVER-DM) Study. BMJ Open Diabetes Res Care. 2019; 7 (1): e000648. ( PubMed , DOI )

Keibun Liu, Takayuki Ogura, Kunihiko Takahashi, Mitsunobu Nakamura, Hiroaki Ohtake, Kenji Fujiduka, Emi Abe, Hitoshi Oosaki, Dai Miyazaki, Hiroyuki Suzuki, Mitsuaki Nishikimi, Mamoru Komatsu, Alan Kawarai Lefor, Takashi Mato: A Progressive Early Mobilization Program Is Significantly Associated With Clinical and Economic Improvement: A Single-Center Quality Comparison Study. Crit. Care Med.. 2019; 47 (9): e744-e752. ( PubMed , DOI )

T Fujii, Y Shibata, A Akane, W Aoki, A Sekiguchi, K Takahashi, S Matsui, K Nishiwaki: A randomised controlled trial of pectoral nerve-2 (PECS 2) block vs. serratus plane block for chronic pain after mastectomy. Anaesthesia. 2019; 74 (12): 1558-1562. ( PubMed , DOI )

Takashi Yamauchi, Takeshi Sasaki, Kunihiko Takahashi, Shigeo Umezaki, Masaya Takahashi, Toru Yoshikawa, Machi Suka, Hiroyuki Yanagisawa: Long working hours, sleep-related problems, and near-misses/injuries in industrial settings using a nationally representative sample of workers in Japan. PLoS ONE. 2019; 14 (7): e0219657. ( PubMed , DOI )

Shiori Komori, Shinji Ueno, Yasuki Ito, Akira Sayo, Monika Meinert, Taro Kominami, Daiki Inooka, Masahiro Kitagawa, Kazuki Nishida, Kunihiko Takahashi, Shigeyuki Matsui, Hiroko Terasaki: Steeper Macular Curvature in Eyes With Non-Highly Myopic Retinitis Pigmentosa. Invest. Ophthalmol. Vis. Sci.. 2019; 60 (8): 3135-3141. ( PubMed , DOI )

Hiroki Nakajima, Mitsuaki Nishikimi, Miho Shimizu, Kazuhiro Hayashi, Takayuki Inoue, Kazuki Nishida, Kunihiko Takahashi, Shigeyuki Matsui, Yoshihiro Nishida, Naoyuki Matsuda: Clinical Frailty Scale Score Before ICU Admission Is Associated With Mobility Disability in Septic Patients Receiving Early Rehabilitation. Crit Care Explor. 2019; 1 (12): e0066. ( PubMed , DOI )

Emiko Okada, Kunihiko Takahashi, Koshi Nakamura, Shigekazu Ukawa, Saeka Takabayashi, Mieko Nakamura, Satoshi Sasaki, Akiko Tamakoshi, Hidemi Takimoto: Dietary patterns and abnormal glucose tolerance among Japanese: findings from the National Health and Nutrition Survey, 2012. Public Health Nutr. 2019; 22 (13): 2460-2468. ( PubMed , DOI )

Masato Yoshihara, Hiroaki Kajiyama, Satoshi Tamauchi, Shiro Suzuki, Kunihiko Takahashi, Shigeyuki Matsui, Fumitaka Kikkawa: Prognostic factors and effects of fertility-sparing surgery in women of reproductive age with ovarian clear-cell carcinoma: a propensity score analysis. J Gynecol Oncol. 2019; 30 (6): e102. ( PubMed , DOI )

Atsushi Niida, Takanori Hasegawa, Satoru Miyano: Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization. PLoS One. 2019; 14 (3): e0210678. ( PubMed , DOI )

Kengo Nomura, Takeshi Y Hiyama, Hiraki Sakuta, Takashi Matsuda, Chia-Hao Lin, Kenta Kobayashi, Kazuto Kobayashi, Tomoyuki Kuwaki, Kunihiko Takahashi, Shigeyuki Matsui, Masaharu Noda: [Na+] increases in body fluids sensed by central Nax induce sympathetically mediated blood pressure elevations via H+-dependent activation of ASIC1a. Neuron. 2019; 101 (1): 60-75.e6. ( PubMed , DOI )

Tatsuhiko Anzai, Kunihiko Takahashi, Michiko Watanabe: Adverse reaction reports of neuroleptic malignant syndrome induced by atypical antipsychotic agents in the Japanese Adverse Drug Event Report (JADER) database. Psychiatry Clin. Neurosci.. 2019; 73 (1): 27-33. ( PubMed , DOI )

Mitsuaki Nishikimi, Takayuki Ogura, Kazuki Nishida, Kunihiko Takahashi, Mitsunobu Nakamura, Shigeyuki Matsui, Naoyuki Matsuda, Taku Iwami: External validation of a risk classification at the emergency department of post-cardiac arrest syndrome patients undergoing targeted temperature management. Resuscitation. 2019; 140 135-141. ( PubMed , DOI )

Takanori Kawabata, Ryo Emoto, Jo Nishino, Kunihiko Takahashi, Shigeyuki Matsui: Two-stage analysis for selecting fixed numbers of features in omics association studies. Stat Med. 2019; 38 (16): 2956-2971. ( PubMed , DOI )

Daisuke Kasugai, Mitsuaki Nishikimi, Kazuki Nishida, Michiko Higashi, Takanori Yamamoto, Atsushi Numaguchi, Kunihiko Takahashi, Shigeyuki Matsui, Naoyuki Matsuda: Timing of administration of epinephrine predicts the responsiveness to epinephrine in norepinephrine-refractory septic shock: a retrospective study. J Intensive Care. 2019; 7 20. ( PubMed , DOI )

Yoshihiro Nishida, Akira Kawai, Junya Toguchida, Akira Ogose, Keisuke Ae, Toshiyuki Kunisada, Yoshihiro Matsumoto, Tomoya Matsunobu, Kunihiko Takahashi, Kazuki Nishida, Toshifumi Ozaki: Clinical features and treatment outcome of desmoid-type fibromatosis: based on a bone and soft tissue tumor registry in Japan. Int J Clin Oncol. 2019; 24 (11): 1498-1505. ( PubMed , DOI )

Comprehensive Search for Prognostic Biomarkers using PCAWG Data 2018.12; 109 291.

Masashi Fujita, Seiya Imoto, Rui Yamaguchi, Takanori Hasegawa, Shuto Hayashi, Kazuhiro Kakimi, Satoru Miyano, Hiroki Yamaue, Kazuaki Chayama, Hidewaki Nakagawa: Genomic insights into immune suppression in liver cancer CANCER SCIENCE. 2018.12; 109 640.

Shintaro Narisada, Diptarama Hendrian, Ryo Yoshinaka, Ayumi Shinohara: Linear-Time Online Algorithm Inferring the Shortest Path from a Walk String Processing and Information Retrieval - 25th International Symposium, SPIRE 2018. 2018.10; 311-324. ( DOI )

Yuta Fujishige, Takuya Takagi, Diptarama Hendrian: Truncated DAWGs and Their Application to Minimal Absent Word Problem. String Processing and Information Retrieval - 25th International Symposium, SPIRE 2018. 2018.10; 139-152. ( DOI )

Yuki Nozaki, Diptarama Hendrian, Ryo Yoshinaka, Ayumi Shinohara: Enumeration of Cryptarithms Using Deterministic Finite Automata Implementation and Application of Automata. 2018.07; 286-298. ( DOI )

Premature Ventricular Contraction Detection from Ambulatory ECG Using Recurrent Neural Networks. 2018.07; 2018 2551-2554. ( PubMed , DOI )

Sakurai Kaori, Chubachi Shotaro, Irie Hidehiro, Tsutsumi Akihiro, Kameyama Naofumi, Kamatani Takashi, Koh Hidefumi, Terashima Takeshi, Nakamura Hidetoshi, Asano Koichiro, Betsuyaku Tomoko: Clinical utility of blood neutrophil-lymphocyte ratio in Japanese COPD patients BMC PULMONARY MEDICINE. 2018.05; 18 (1): 65. ( PubMed , DOI )

Konno Y, Nagaoka S, Kimura I, Yamamoto K, Kagawa Y, Kumata R, Aso H, Ueda MT, Nakagawa S, Kobayashi T, Koyanagi Y, Sato K: New World feline APOBEC3 potently controls inter-genus lentiviral transmission. Retrovirology. 2018.04; 15 (1): 31. ( PubMed , DOI )

Immuno-genomic subtype of liver cancer correlates with mechanisms of immune suppression and prognosis 2018.03; 12

Masashi Fujita, Seiya Imoto, Rui Yamaguchi, Takanori Hasegawa, Shuto Hayashi, Satoru Miyano, Hiroki Yamaue, Kazuaki Chayama, Hidewaki Nakagawa: Immuno-genomic subtype of liver cancer correlates with mechanisms of immune suppression and prognosis HUMAN GENOMICS. 2018.03; 12

Kei Sato, Naoko Misawa, Junko S Takeuchi, Tomoko Kobayashi, Taisuke Izumi, Hirofumi Aso, Shumpei Nagaoka, Keisuke Yamamoto, Izumi Kimura, Yoriyuki Konno, Yusuke Nakano, Yoshio Koyanagi: Experimental adaptive evolution of simian immunodeficiency virus SIVcpz to pandemic human immunodeficiency virus type 1 by using a humanized mouse model Journal of Virology. 2018.02; 92 (4): e01905-17. ( PubMed , DOI )

New variants of pattern matching with constants and variables 2018; 10706 611-623. ( DOI )

Efficient dynamic dictionary matching with DAWGs and AC-automata 2018; 792 161-172. ( DOI )

Duel and sweep algorithm for order-preserving pattern matching 2018; 10706 624-635. ( DOI )

Kuwae, M; Fukunaga, K; Kamatani, T; Watanabe, R; Okuzumi, S; Baba, R; Tanosaki, T; Matsuzaka, M; Mochimaru, T; Ueda, S; Suzuki, Y; Asano, K; Betsuyaku, T: Phenotype Classification Based on Risk Factors for Asthma Exacerbation Factors in Japanese Patients with Severe Asthma AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. 2018; 197

ECG Quality Assessment Using 1D-Convolutional Neural Network 2018; 2018-August 780-784. ( DOI )

Atrial Fibrillation Detection Using Convolutional Neural Networks 2018; 84-89. ( DOI )

Masakazu Ichinose, Yoshiaki Minakata, Takashi Motegi, Jun Ueki, Yasuhiro Gon, Tetsuo Seki, Tatsuhiko Anzai, Shuhei Nakamura, Kazuto Hirata: Efficacy of tiotropium/olodaterol on lung volume, exercise capacity, and physical activity. Int J Chron Obstruct Pulmon Dis. 2018; 13 1407-1419. ( PubMed , DOI )

Yoshiya Tanaka, Hideto Kameda, Kazuyoshi Saito, Yuko Kaneko, Eiichi Tanaka, Shinsuke Yasuda, Naoto Tamura, Keishi Fujio, Takao Fujii, Toshihisa Kojima, Tatsuhiko Anzai, Chikuma Hamada, Yoshihisa Fujino, Shinya Matsuda, Hitoshi Kohsaka: Effect of subcutaneous tocilizumab treatment on work/housework status in biologic-naïve rheumatoid arthritis patients using inverse probability of treatment weighting: FIRST ACT-SC study. Arthritis Res. Ther.. 2018; 20 (1): 151. ( PubMed , DOI )

Mitsuaki Nishikimi, Atsushi Numaguchi, Kunihiko Takahashi, Shigeyuki Matsui, Naoyuki Matsuda: The authors reply. Crit Care Med. 2018; 46 (10): e1010-e1011. ( PubMed , DOI )

Noriki Fujisato, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Right-to-left Online Construction of Parameterized Position Heaps. Prague Stringology Conference 2018, Prague, Czech Republic, August 27-28, 2018.. 2018; 91-102.

Yuki Kuhara, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Recovering, Counting and Enumerating Strings from Forward and Backward Suffix Arrays. String Processing and Information Retrieval - 25th International Symposium, SPIRE 2018, Lima, Peru, October 9-11, 2018, Proceedings. 2018; 254-267. ( DOI )

Akihiro Nishi, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: O(n log n)-time Text Compression by LZ-style Longest First Substitution. Prague Stringology Conference 2018, Prague, Czech Republic, August 27-28, 2018.. 2018; 12-26.

Isamu Furuya, Yuto Nakashima, Tomohiro I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Lyndon Factorization of Grammar Compressed Texts Revisited. Annual Symposium on Combinatorial Pattern Matching, CPM 2018, July 2-4, 2018 - Qingdao, China. 2018; 24:1-24:10. ( DOI )

Keisuke Goto, Tomohiro I, Hideo Bannai, Shunsuke Inenaga: Block Palindromes: A New Generalization of Palindromes. String Processing and Information Retrieval - 25th International Symposium, SPIRE 2018, Lima, Peru, October 9-11, 2018, Proceedings. 2018; 183-190. ( DOI )

Hideo Bannai, Travis Gagie, Tomohiro I: Online LZ77 Parsing and Matching Statistics with RLBWTs. Annual Symposium on Combinatorial Pattern Matching, CPM 2018, July 2-4, 2018 - Qingdao, China. 2018; 7:1-7:12. ( DOI )

Kotaro Aoyama, Yuto Nakashima, Tomohiro I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Faster Online Elastic Degenerate String Matching. Annual Symposium on Combinatorial Pattern Matching, CPM 2018, July 2-4, 2018 - Qingdao, China. 2018; 9:1-9:10. ( DOI )

Hiroe Inoue, Yuto Nakashima, Takuya Mieno, Shunsuke Inenaga,Array, Masayuki Takeda: Algorithms and combinatorial properties on shortest unique palindromic substrings. J. Discrete Algorithms. 2018; 52-53 122-132. ( DOI )

Rui Henriques, Alexandre P. Francisco, Luís M, S. Russo, Hideo Bannai: Order-Preserving Pattern Matching Indeterminate Strings. Annual Symposium on Combinatorial Pattern Matching, CPM 2018, July 2-4, 2018 - Qingdao, China. 2018; 2:1-2:15. ( DOI )

Hideo Bannai, Travis Gagie, Shunsuke Inenaga, Juha Kärkkäinen, Dominik Kempa, Marcin Piatkowski, Shiho Sugimoto: Diverse Palindromic Factorization is NP-Complete. Int. J. Found. Comput. Sci.. 2018; 29 (2): 143-164. ( DOI )

Mitsuru Funakoshi, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Longest substring palindrome after edit. Annual Symposium on Combinatorial Pattern Matching, CPM 2018, July 2-4, 2018 - Qingdao, China. 2018; 12:1-12:14. ( DOI )

Takafumi Inoue, Shunsuke Inenaga, Heikki Hyyrö, Hideo Bannai, Masayuki Takeda: Computing longest common square subsequences. Annual Symposium on Combinatorial Pattern Matching, CPM 2018, July 2-4, 2018 - Qingdao, China. 2018; 15:1-15:13. ( DOI )

Yuki Urabe, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Longest Lyndon Substring After Edit. Annual Symposium on Combinatorial Pattern Matching, CPM 2018, July 2-4, 2018 - Qingdao, China. 2018; 19:1-19:10. ( DOI )

Mitsuaki Nishikimi, Atsushi Numaguchi, Kunihiko Takahashi, Shigeyuki Matsui, Naoyuki Matsuda: The authors reply. Crit Care Med. 2018; 46 (12): e1225-e1226. ( PubMed , DOI )

Mochimaru T, Fukunaga K, Kuwae M, Watanabe R, Okuzumi S, Baba R, Kamatani T, Tanosaki T, Matsusaka M, Ueda S, Betsuyaku T: Neutrophil to Lymphocyte Ratio Is a Novel Predictor of Severe Exacerbation in Asthma Patients AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. 2018; 197

Kuwae, M, Fukunaga, K, Kamatani, T, Watanabe, R, Okuzumi, S, Baba, R, Tanosaki, T, Matsuzaka, M, Mochimaru, T, Ueda, S, Suzuki, Y, Asano, K, Betsuyaku, T: Phenotype Classification Based on Risk Factors for Asthma Exacerbation Factors in Japanese Patients with Severe Asthma AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. 2018; 197

Yoshiaki Minakata, Takashi Motegi, Jun Ueki, Yasuhiro Gon, Tetsuo Seki, Tatsuhiko Anzai, Shuhei Nakamura, Kazuto Hirata, Masakazu Ichinose: Efficacy of tiotropium/olodaterol on sedentary/active time in COPD patients: VESUTO study European Respiratory Journal. 2018; 52 ( DOI )

Saeko Fukamachi, Masayuki Hashiguchi, Kunihiko Takahashi, Mayumi Mochizuki: Exploratory evaluation of a commercially available Japanese medical record database as an external control for comparative clinical trials in new drug development: Amyotrophic lateral sclerosis. Neurology and Clinical Neuroscience. 2018; 6 (4): 94-99. ( DOI )

Mitsuaki Nishikimi, Atsushi Numaguchi, Kunihiko Takahashi, Yasuhiro Miyagawa, Kota Matsui, Michiko Higashi, Go Makishi, Shigeyuki Matsui, Naoyuki Matsuda: Effect of Administration of Ramelteon, a Melatonin Receptor Agonist, on the Duration of Stay in the ICU: A Single-Center Randomized Placebo-Controlled Trial. Crit. Care Med.. 2018; 46 (7): 1099-1105. ( PubMed , DOI )

Takaharu Matsuhisa, Noriyuki Takahashi, Muneyoshi Aomatsu, Kunihiko Takahashi, Jo Nishino, Nobutaro Ban, Stewart W Mercer: How many patients are required to provide a high level of reliability in the Japanese version of the CARE Measure? A secondary analysis. BMC Fam Pract. 2018; 19 (1): 138. ( PubMed , DOI )

Yoshiko Tominaga, Tohru Aomori, Tomohisa Hayakawa, Nobuhiko Kijima, Donald E Morisky, Kunihiko Takahashi, Mayumi Mochizuki: Possible associations of personality traits representing harm avoidance and self-directedness with medication adherence in Japanese patients with type 2 diabetes. J Pharm Health Care Sci. 2018; 4 16. ( PubMed , DOI )

Mitsuaki Nishikimi, Takayuki Ogura, Kazuki Nishida, Kunihiko Takahashi, Kenji Fukaya, Keibun Liu, Mitsunobu Nakamura, Shigeyuki Matsui, Naoyuki Matsuda: Differential effect of mild therapeutic hypothermia depending on the findings of hypoxic encephalopathy on early CT images in patients with post-cardiac arrest syndrome. Resuscitation. 2018; 128 11-15. ( PubMed , DOI )

Junya Okumura, Yuichiro Shindo, Kunihiko Takahashi, Masahiro Sano, Yasuteru Sugino, Tetsuya Yagi, Hiroyuki Taniguchi, Hideo Saka, Shigeyuki Matsui, Yoshinori Hasegawa: Mortality in patients with community-onset pneumonia at low risk of drug-resistant pathogens: Impact of β-lactam plus macrolide combination therapy. Respirology. 2018; 23 (5): 526-534. ( PubMed , DOI )

Mitsuaki Nishikimi, Takayuki Ogura, Kota Matsui, Kunihiko Takahashi, Kenji Fukaya, Keibun Liu, Hideo Morita, Mitsunobu Nakamura, Shigeyuki Matsui, Naoyuki Matsuda: Accuracy of the first interpretation of early brain CT images for predicting the prognosis of post-cardiac arrest syndrome patients at the emergency department. J Intensive Care. 2018; 6 26. ( PubMed , DOI )

Keibun Liu, Takayuki Ogura, Kunihiko Takahashi, Mitsunobu Nakamura, Hiroaki Ohtake, Kenji Fujiduka, Emi Abe, Hitoshi Oosaki, Dai Miyazaki, Hiroyuki Suzuki, Mitsuaki Nishikimi, Alan Kawarai Lefor, Takashi Mato: The safety of a novel early mobilization protocol conducted by ICU physicians: a prospective observational study. J Intensive Care. 2018; 6 10. ( PubMed , DOI )

Tomoki Nakaya, Kunihiko Takahashi, Hideto Takahashi, Seiji Yasumura, Tetsuya Ohira, Hitoshi Ohto, Akira Ohtsuru, Sanae Midorikawa, Shinichi Suzuki, Hiroki Shimura, Shunichi Yamashita, Koichi Tanigawa, Kenji Kamiya: Spatial analysis of the geographical distribution of thyroid cancer cases from the first-round thyroid ultrasound examination in Fukushima Prefecture. Sci Rep. 2018; 8 (1): 17661. ( PubMed , DOI )

Kunihiko Takahashi, Hideyasu Shimadzu: Multiple-cluster detection test for purely temporal disease clustering: Integration of scan statistics and generalized linear models. PLoS ONE. 2018; 13 (11): e0207821. ( PubMed , DOI )

Masataka Igeta, Kunihiko Takahashi, Shigeyuki Matsui: Power and sample size calculation incorporating misspecifications of the variance function in comparative clinical trials with over-dispersed count data. Biometrics. 2018; 74 (4): 1459-1467. ( PubMed , DOI )

Ken Horisaki, Kunihiko Takahashi, Hidemi Ito, Shigeyuki Matsui: A Dose-Response Meta-analysis of Coffee Consumption and Colorectal Cancer Risk in the Japanese Population: Application of a Cubic-Spline Model. J Epidemiol. 2018; 28 (12): 503-509. ( PubMed , DOI )

Satoshi Kuriki, Kunihiko Takahashi, Hisayuki Hara: Multiplicity adjustment for temporal and spatial scan statistics using Markov property Japanese Journal of Statistics and Data Science. 2018; 1 (1): 191-231. ( DOI )

Takayuki Ogura, Yoshihiko Nakamura, Kunihiko Takahashi, Kazuki Nishida, Daisuke Kobashi, Shigeyuki Matsui: Treatment of patients with sepsis in a closed intensive care unit is associated with improved survival: a nationwide observational study in Japan. J Intensive Care. 2018; 6 57. ( PubMed , DOI )

Emiko Okada, Kunihiko Takahashi, Hidemi Takimoto, Saeka Takabayashi, Tomoko Kishi, Tohru Kobayashi, Koshi Nakamura, Shigekazu Ukawa, Mieko Nakamura, Satoshi Sasaki, Akiko Tamakoshi: Dietary patterns among Japanese adults: findings from the National Health and Nutrition Survey, 2012. Asia Pac J Clin Nutr. 2018; 27 (5): 1120-1130. ( PubMed , DOI )

Y Tominaga, T Aomori, T Hayakawa, D E Morisky, K Takahashi, M Mochizuki: Relationship between medication adherence and glycemic control in Japanese patients with type 2 diabetes. Pharmazie. 2018; 73 (10): 609-612. ( PubMed , DOI )

Mochimaru T., Fukunaga K., Kuwae M., Watanabe R., Okuzumi S., Baba R., Kamatani T., Tanosaki T., Matsusaka M., Ueda S., Betsuyaku T.: Neutrophil to Lymphocyte Ratio Is a Novel Predictor of Severe Exacerbation in Asthma Patients AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. 2018; 197

Takanori Hasegawa, Kaname Kojima, Yosuke Kawai, Masao Nagasaki: Time-Series Filtering for Replicated Observations via a Kernel Approximate Bayesian Computation IEEE Trans. Signal Process. 2018; 66 (23): 6148-6161.

James R Krycer, Katsuyuki Yugi, Akiyoshi Hirayama, Daniel J Fazakerley, Lake-Ee Quek, Richard Scalzo, Satoshi Ohno, Mark P Hodson, Satsuki Ikeda, Futaba Shoji, Kumi Suzuki, Westa Domanova, Benjamin L Parker, Marin E Nelson, Sean J Humphrey, Nigel Turner, Kyle L Hoehn, Gregory J Cooney, Tomoyoshi Soga, Shinya Kuroda, David E James: Dynamic Metabolomics Reveals that Insulin Primes the Adipocyte for Glucose Metabolism. Cell Rep. 2017.12; 21 (12): 3536-3547. ( PubMed , DOI )

Kamatani Takashi, Fukunaga Koichi, Miyata Kaede, Shirasaki Yoshitaka, Tanaka Junji, Baba Rie, Matsusaka Masako, Kamatani Naoyuki, Moro Kazuyo, Betsuyaku Tomoko, Uemura Sotaro: Construction of a system using a deep learning algorithm to count cell numbers in nanoliter wells for viable single-cell experiments SCIENTIFIC REPORTS. 2017.12; 7 (1): 16831. ( PubMed , DOI )

Kazuyuki Narisawa, Hideharu Hiratsuka, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Efficient Computation of Substring Equivalence Classes with Suffix Arrays Algorithmica. 2017.10; 79 (2): 291-318. ( DOI )

Tomohiro Morita, Abidur Rahman, Takanori Hasegawa, Akihiko Ozaki, Tetsuya Tanimoto: The Potential Possibility of Symptom Checker. Int J Health Policy Manag. 2017.10; 6 (10): 615-616. ( PubMed , DOI )

Mizumoto Hayato, Todoroki Shota, Diptarama, Yoshinaka Ryo, Shinohara Ayumi: An efficient query learning algorithm for zero-suppressed binary decision diagrams 28th International Conference on Algorithmic Learning Theory. 2017.10; 76 360-371.

Katsunori Masaki, Koichi Fukunaga, Masako Matsusaka, Hiroki Kabata, Takae Tanosaki, Takao Mochimaru, Takashi Kamatani, Kengo Ohtsuka, Rie Baba, Soichiro Ueda, Yusuke Suzuki, Fumio Sakamaki, Yoshitaka Oyamada, Takashi Inoue, Tsuyoshi Oguma, Koichi Sayama, Hidefumi Koh, Morio Nakamura, Akira Umeda, Katsuhiko Kamei, Kenji Izuhara, Koichiro Asano, Tomoko Betsuyaku: Characteristics of severe asthma with fungal sensitization. Ann Allergy Asthma Immunol. 2017.09; 119 (3): 253-257. ( PubMed , DOI )

Yuto Nakashima, Takashi Okabe, Tomohiro I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Inferring strings from Lyndon factorization Theoretical Computer Science. 2017.08; 689 147-156. ( DOI )

Position heaps for parameterized strings 2017.07; 78 8:1-8:13. ( DOI )

Yusuke Nakano, Hirofumi Aso, Andrew Soper, Eri Yamada, Miyu Moriwaki, Guillermo Juarez-Fernandez, Yoshio Koyanagi, Kei Sato: A conflict of interest: the evolutionary arms race between mammalian APOBEC3 and lentiviral Vif Retrovirology. 2017.05; 14 (1): 31. ( PubMed , DOI )

Andrew Soper, Guillermo Juarez-Fernandez, Hirofumi Aso, Miyu Moriwaki, Eri Yamada, Yusuke Nakano, Yoshio Koyanagi, Kei Sato: Various plus unique: Viral protein U as a plurifunctional protein for HIV-1 replication Experimental Biology and Medicine. 2017.04; 242 (8): 850-858. ( PubMed , DOI )

Sato Ichinari, Diptarama, Chubachi Kaizaburo, Yoshinaka Ryo, Shinohara Ayumi: Analysis of laboratories electrical energy consumption by visualization for saving electrical energy International Journal of Institutional Research and Management. 2017.03; 1 (1): 53-66.

Masaki, K; Fukunaga, K; Matsusaka, M; Kabata, H; Tanosaki, T; Mochimaru, T; Kamatani, T; Ohtsuka, K; Baba, R; Ueda, S; Suzuki, Y; Sakamaki, F; Oyamada, Y; Inoue, T; Oguma, T; Sayama, K; Koh, H; Nakamura, M; Umeda, A; Kamei, K; Asano, K; Betsuyaku, T: Characteristics Of Moderate To Severe Asthma With Fungal Sensitization AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. 2017; 195

Mochimaru, T; Fukunaga, K; Masaki, K; Matsusaka, M; Okuzumi, S; Baba, R; Tanosaki, T; Suzuki, Y; Kamatani, T; Betsuyaku, T: The Relationship Between Anxiety And Serum Inflammatory Cytokines In Patients With Asthma AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. 2017; 195

Baba, R; Fukunaga, K; Tanosaki, T; Chubachi, S; Kamatani, T; Otsuka, K; Matsusaka, M; Mochimaru, T; Ueda, S; Suzuki, Y; Betsuyaku, T: Effect Of Aspergillus Sensitization On Patients With Chronic Obstructive Pulmonary Disease (COPD) Without Asthma AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. 2017; 195

Masakazu Ichinose, Yoshiaki Minakata, Takashi Motegi, Jun Ueki, Tetsuo Seki, Tatsuhiko Anzai, Ayako Takizawa, Lars Grönke, Kazuto Hirata: Study design of VESUTO; efficacy of tiotropium/olodaterol on lung hyperinflation, exercise capacity, and physical activity in Japanese patients with COPD Adv Ther. 2017; 34 (7): 1622-1635. ( PubMed , DOI )

Hideo Bannai, Shunsuke Inenaga, Dominik Köppl: Computing All Distinct Squares in Linear Time for Integer Alphabets. 28th Annual Symposium on Combinatorial Pattern Matching, CPM 2017, July 4-6, 2017, Warsaw, Poland. 2017; 22:1-22:18. ( DOI )

Takuya Mieno, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Tight Bounds on the Maximum Number of Shortest Unique Substrings. 28th Annual Symposium on Combinatorial Pattern Matching, CPM 2017, July 4-6, 2017, Warsaw, Poland. 2017; 24:1-24:11. ( DOI )

Keita Kuboi, Yuta Fujishige, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Faster STR-IC-LCS Computation via RLE. 28th Annual Symposium on Combinatorial Pattern Matching, CPM 2017, July 4-6, 2017, Warsaw, Poland. 2017; 20:1-20:12. ( DOI )

Yuta Fujishige, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Almost Linear Time Computation of Maximal Repetitions in Run Length Encoded Strings. 28th International Symposium on Algorithms and Computation, ISAAC 2017, December 9-12, 2017, Phuket, Thailand. 2017; 33:1-33:12. ( DOI )

Yuto Nakashima, Hiroe Inoue, Takuya Mieno, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Shortest Unique Palindromic Substring Queries in Optimal Time. Combinatorial Algorithms - 28th International Workshop, IWOCA 2017, Newcastle, NSW, Australia, July 17-21, 2017, Revised Selected Papers. 2017; 397-408. ( DOI )

Shiho Sugimoto, Naoki Noda, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Computing Abelian String Regularities Based on RLE. Combinatorial Algorithms - 28th International Workshop, IWOCA 2017, Newcastle, NSW, Australia, July 17-21, 2017, Revised Selected Papers. 2017; 420-431. ( DOI )

Yuto Nakashima, Takuya Takagi, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: On Reverse Engineering the Lyndon Tree. Proceedings of the Prague Stringology Conference 2017, Prague, Czech Republic, August 28-30, 2017. 2017; 108-117.

Yuka Tanimura, Takaaki Nishimoto, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: Small-Space LCE Data Structure with Constant-Time Queries. 42nd International Symposium on Mathematical Foundations of Computer Science, MFCS 2017, August 21-25, 2017 - Aalborg, Denmark. 2017; 10:1-10:15. ( DOI )

Temma Nakamura, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Order Preserving Pattern Matching on Trees and DAGs. String Processing and Information Retrieval - 24th International Symposium, SPIRE 2017, Palermo, Italy, September 26-29, 2017, Proceedings. 2017; 271-277. ( DOI )

鎌谷高志, 福永興壱: 重症喘息の診断基準と病型分類 最新医学. 2017; 72 (7):

Masaki, K, Fukunaga, K, Matsusaka, M, Kabata, H, Tanosaki, T, Mochimaru, T, Kamatani, T, Ohtsuka, K, Baba, R, Ueda, S, Suzuki, Y, Sakamaki, F, Oyamada, Y, Inoue, T, Oguma, T, Sayama, K, Koh, H, Nakamura, M, Umeda, A, Kamei, K, Asano, K, Betsuyaku, T: Characteristics Of Moderate To Severe Asthma With Fungal Sensitization AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. 2017; 195

Baba, R, Fukunaga, K, Tanosaki, T, Chubachi, S, Kamatani, T, Otsuka, K, Matsusaka, M, Mochimaru, T, Ueda, S, Suzuki, Y, Betsuyaku, T: Effect Of Aspergillus Sensitization On Patients With Chronic Obstructive Pulmonary Disease (COPD) Without Asthma AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. 2017; 195

Mochimaru, T, Fukunaga, K, Masaki, K, Matsusaka, M, Okuzumi, S, Baba, R, Tanosaki, T, Suzuki, Y, Kamatani, T, Betsuyaku, T: The Relationship Between Anxiety And Serum Inflammatory Cytokines In Patients With Asthma AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. 2017; 195

Hideo Bannai, Tomohiro, I, Shunsuke Inenaga, Yuto Nakashima, Masayuki Takeda, Kazuya Tsuruta: The "Runs" Theorem SIAM Journal on Computing. 2017; 46 (5): 1501-1514. ( DOI )

Hideto Takahashi, Kunihiko Takahashi, Hiroki Shimura, Seiji Yasumura, Satoru Suzuki, Akira Ohtsuru, Sanae Midorikawa, Tetsuya Ohira, Hitoshi Ohto, Shunichi Yamashita, Kenji Kamiya: Simulation of expected childhood and adolescent thyroid cancer cases in Japan using a cancer-progression model based on the National Cancer Registry: Application to the first-round thyroid examination of the Fukushima Health Management Survey. Medicine (Baltimore). 2017; 96 (48): e8631. ( PubMed , DOI )

Yasuyuki Okumura, Nobuo Sakata, Kunihiko Takahashi, Daisuke Nishi, Hisateru Tachimori: Epidemiology of overdose episodes from the period prior to hospitalization for drug poisoning until discharge in Japan: An exploratory descriptive study using a nationwide claims database. J Epidemiol. 2017; 27 (8): 373-380. ( PubMed , DOI )

Akira Sayo, Shinji Ueno, Taro Kominami, Kazuki Nishida, Daiki Inooka, Ayami Nakanishi, Shunsuke Yasuda, Satoshi Okado, Kunihiko Takahashi, Shigeyuki Matsui, Hiroko Terasaki: Longitudinal study of visual field changes determined by Humphrey Field Analyzer 10-2 in patients with Retinitis Pigmentosa. Sci Rep. 2017; 7 (1): 16383. ( PubMed , DOI )

Kunihiko Takahashi, Hisateru Tachimori, Chiemi Kan, Daisuke Nishi, Yasuyuki Okumura, Naohiro Kato, Tadashi Takeshima: Spatial analysis for regional behavior of patients with mental disorders in Japan. Psychiatry Clin. Neurosci.. 2017; 71 (4): 254-261. ( PubMed , DOI )

Maki Takagishi, Masato Sawada, Shinya Ohata, Naoya Asai, Atsushi Enomoto, Kunihiko Takahashi, Liang Weng, Kaori Ushida, Hosne Ara, Shigeyuki Matsui, Kozo Kaibuchi, Kazunobu Sawamoto, Masahide Takahashi: Daple Coordinates Planar Polarized Microtubule Dynamics in Ependymal Cells and Contributes to Hydrocephalus. Cell Rep. 2017; 20 (4): 960-972. ( PubMed , DOI )

Mitsuaki Nishikimi, Naoyuki Matsuda, Kota Matsui, Kunihiko Takahashi, Tadashi Ejima, Keibun Liu, Takayuki Ogura, Michiko Higashi, Hitoshi Umino, Go Makishi, Atsushi Numaguchi, Satoru Matsushima, Hideki Tokuyama, Mitsunobu Nakamura, Shigeyuki Matsui: A novel scoring system for predicting the neurologic prognosis prior to the initiation of induced hypothermia in cases of post-cardiac arrest syndrome: the CAST score. Scand J Trauma Resusc Emerg Med. 2017; 25 (1): 49. ( PubMed , DOI )

Computing Longest Single-arm-gapped Palindromes in a String 2017; 10139 375-386. ( DOI )

Yohei Ueki, Diptarama, Masatoshi Kurihara, Yoshiaki Matsuoka, Kazuyuki Narisawa, Ryo Yoshinaka, Hideo Bannai, Shunsuke Inenaga, Ayumi Shinohara: Longest Common Subsequence in at Least k Length Order-Isomorphic Substrings SOFSEM 2017: Theory and Practice of Computer Science. 2017; 363-374. ( DOI )

Yoshiaki Matsuoka, Takahiro Aoki, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Generalized pattern matching and periodicity under substring consistent equivalence relations Theoretical Computer Science. 2016.12; 656 225-233. ( DOI )

Tomohiro I, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Faster Lyndon factorization algorithms for SLP and LZ78 compressed text Theoretical Computer Science. 2016.12; 656 215-224. ( DOI )

Takanori Sano, Kentaro Kawata, Satoshi Ohno, Katsuyuki Yugi, Hiroaki Kakuda, Hiroyuki Kubota, Shinsuke Uda, Masashi Fujii, Katsuyuki Kunida, Daisuke Hoshino, Atsushi Hatano, Yuki Ito, Miharu Sato, Yutaka Suzuki, Shinya Kuroda: Selective control of up-regulated and down-regulated genes by temporal patterns and doses of insulin. Sci Signal. 2016.11; 9 (455): ra112. ( PubMed , DOI )

Sato Ichinari, Chubachi Kaizaburo, Diptarama: Evaluation of Machine Learning Methods on SPiCe International Conference on Grammatical Inference. 2016.10; 149-153.

Golnaz Badkobeh, Hideo Bannai, Keisuke Goto, Tomohiro I, Costas S. Iliopoulos, Shunsuke Inenaga, Simon J. Puglisi, Shiho Sugimoto: Closed factorization Discrete Applied Mathematics. 2016.10; 212 23-29. ( DOI )

Takanori Hasegawa, Kaname Kojima, Yosuke Kawai, Kazuharu Misawa, Takahiro Mimori, Masao Nagasaki: AP-SKAT: highly-efficient genome-wide rare variant association test. BMC Genomics. 2016.09; 17 (1): 745. ( PubMed , DOI )

Seizo Koshiba, Ikuko Motoike, Kaname Kojima, Takanori Hasegawa, Matsuyuki Shirota, Tomo Saito, Daisuke Saigusa, Inaho Danjoh, Fumiki Katsuoka, Soichi Ogishima, Yosuke Kawai, Yumi Yamaguchi-Kabata, Miyuki Sakurai, Sachiko Hirano, Junichi Nakata, Hozumi Motohashi, Atsushi Hozawa, Shinichi Kuriyama, Naoko Minegishi, Masao Nagasaki, Takako Takai-Igarashi, Nobuo Fuse, Hideyasu Kiyomoto, Junichi Sugawara, Yoichi Suzuki, Shigeo Kure, Nobuo Yaegashi, Osamu Tanabe, Kengo Kinoshita, Jun Yasuda, Masayuki Yamamoto: The structural origin of metabolic quantitative diversity. Sci Rep. 2016.08; 6 31463. ( PubMed , DOI )

Kojima K, Kawai Y, Nariai N, Mimori T, Hasegawa T, Nagasaki M: Short tandem repeat number estimation from paired-end reads for multiple individuals by considering coalescent tree. BMC genomics. 2016.08; 17 Suppl 5 494. ( PubMed , DOI )

Diptarama, Yoshinaka R, Shinohara A: QBF encoding of generalized tic-Tac-Toe CEUR Workshop Proceedings. 2016.07; 1719 14-26.

Junji Kurashige, Takanori Hasegawa, Atsushi Niida, Keishi Sugimachi, Niantao Deng, Kosuke Mima, Ryutaro Uchi, Genta Sawada, Yusuke Takahashi, Hidetoshi Eguchi, Masashi Inomata, Seigo Kitano, Takeo Fukagawa, Mitsuru Sasako, Hiroki Sasaki, Shin Sasaki, Masaki Mori, Kazuyoshi Yanagihara, Hideo Baba, Satoru Miyano, Patrick Tan, Koshi Mimori: Integrated Molecular Profiling of Human Gastric Cancer Identifies DDR2 as a Potential Regulator of Peritoneal Dissemination. Sci Rep. 2016.03; 6 22371. ( PubMed , DOI )

Hasegawa Takanori, Niida Atsushi, Mori Tomoya, Shimamura Teppei, Yamaguchi Rui, Miyano Satoru, Akutsu Tatsuya, Imoto Seiya: A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models COMPUTATIONAL STATISTICS & DATA ANALYSIS. 2016.02; 94 63-74. ( DOI )

Diptarama, Ueki Y, Narisawa K, Shinohara A: KMP based pattern matching algorithms for multi-track strings CEUR Workshop Proceedings. 2016.01; 1548 100-107.

Fast Full Permuted Pattern Matching Algorithms on Multi-track Strings 2016; 7-21.

Visualization and analysis of electrical energy consumption in laboratories 2016; 509-512. ( DOI )

Takaaki Nishimoto, Tomohiro I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Fully Dynamic Data Structure for LCE Queries in Compressed Space. 41st International Symposium on Mathematical Foundations of Computer Science, MFCS 2016, August 22-26, 2016 - Kraków, Poland. 2016; 72:1-72:15. ( DOI )

Yuta Fujishige, Yuki Tsujimaru, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Computing DAWGs and Minimal Absent Words in Linear Time for Integer Alphabets. 41st International Symposium on Mathematical Foundations of Computer Science, MFCS 2016, August 22-26, 2016 - Kraków, Poland. 2016; 38:1-38:14. ( DOI )

Takuya Mieno, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Shortest Unique Substring Queries on Run-Length Encoded Strings. 41st International Symposium on Mathematical Foundations of Computer Science, MFCS 2016, August 22-26, 2016 - Kraków, Poland. 2016; 69:1-69:11. ( DOI )

Yuka Tanimura, Tomohiro I, Hideo Bannai, Shunsuke Inenaga, Simon J. Puglisi, Masayuki Takeda: Deterministic Sub-Linear Space LCE Data Structures With Efficient Construction. 27th Annual Symposium on Combinatorial Pattern Matching, CPM 2016, June 27-29, 2016, Tel Aviv, Israel. 2016; 1:1-1:10. ( DOI )

Yoshiaki Matsuoka, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda, Florin Manea: Factorizing a String into Squares in Linear Time. 27th Annual Symposium on Combinatorial Pattern Matching, CPM 2016, June 27-29, 2016, Tel Aviv, Israel. 2016; 27:1-27:12. ( DOI )

Eiji Sadashima, Satoshi Hattori, Kunihiko Takahashi: Meta-analysis of prognostic studies for a biomarker with a study-specific cutoff value. Res Synth Methods. 2016; 7 (4): 402-419. ( PubMed , DOI )

Mitsuaki Nishikimi, Naoyuki Matsuda, Kota Matsui, Kunihiko Takahashi, Tadashi Ejima, Keibun Liu, Takayuki Ogura, Michiko Higashi, Hitoshi Umino, Go Makishi, Atsushi Numaguchi, Satoru Matsushima, Hideki Tokuyama, Mitsunobu Nakamura, Shigeyuki Matsui: CAST: a new score for early prediction of neurological outcomes after cardiac arrest before therapeutic hypothermia with high accuracy. Intensive Care Med. 2016; 42 (12): 2106-2107. ( PubMed , DOI )

Emi Ayada, Takanori Hasegawa, Atsushi Niida, Satoru Miyano, Seiya Imoto: Binary contingency table method for analysing gene mutation in cancer genome 2016; 12 (3): 211-226.

T. Hasegawa, S. Hayashi, E. Shimizu, S. Mizuno, R. Yamaguchi, S. Miyano, H. Nakagawa, S. Imoto: An in silico automated pipeline to identify tumor specic neoantigens from whole genome and exome sequencing data Proceeding of 12th International Symposium on Bioinformatics Research and Applications. 2016;

Yuta Fujishige, Michitaro Nakamura, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Finding Gapped Palindromes Online Combinatorial Algorithms. 2016; 9843 191-202. ( DOI )

Drawing Strategies for Generalized Tic-Tac-Toe (p, q) 2016; 1705 ( DOI )

Hiroe Inoue, Yoshiaki Matsuoka, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Computing Smallest and Largest Repetition Factorizations in O(n log n) Time PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2016. 2016; 135-145.

Takaaki Nishimoto, Tomohiro, I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Dynamic Index and LZ Factorization in Compressed Space PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2016. 2016; 158-171.

AC-automaton update algorithm for semi-dynamic dictionary matching 2016; 9954 110-121. ( DOI )

Yuto Nakashima, Tomohiro I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Constructing LZ78 tries and position heaps in linear time for large alphabets Information Processing Letters. 2015.09; 115 (9): 655-659. ( DOI )

Emi Ayada, Atsushi Niida, Takanori Hasegawa, Satoru Miyano, Seiya Imoto: Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome BIOINFORMATICS RESEARCH AND APPLICATIONS (ISBRA 2015). 2015.06; 9096 12-23.

Hasegawa T, Mori T, Yamaguchi R, Shimamura T, Miyano S, Imoto S, Akutsu T: Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks. BMC systems biology. 2015.03; 9 14. ( PubMed , DOI )

Kaori Nomura, Kunihiko Takahashi, Yasushi Hinomura, Genta Kawaguchi, Yasuyuki Matsushita, Hiroko Marui, Tatsuhiko Anzai, Masayuki Hashiguchi, Mayumi Mochizuki: Effect of database profile variation on drug safety assessment: an analysis of spontaneous adverse event reports of Japanese cases. Drug Des Devel Ther. 2015; 9 3031-3041. ( PubMed , DOI )

Takashi Kamatani, Takemichi Okada, Hiroyoshi Iguchi, Yoshihito Takahashi, Hiroaki Yokomori: Liver abscess caused by Salmonella choleraesuis. Int J Gen Med. 2015; 8 155-161. ( PubMed , DOI )

Hideo Bannai, Tomohiro I, Shunsuke Inenaga, Yuto Nakashima, Masayuki Takeda, Kazuya Tsuruta: A new characterization of maximal repetitions by Lyndon trees. Proceedings of the Twenty-Sixth Annual ACM-SIAM Symposium on Discrete Algorithms, SODA 2015, San Diego, CA, USA, January 4-6, 2015. 2015; 562-571. ( DOI )

Takaaki Nishimoto, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Computing Left-Right Maximal Generic Words. Proceedings of the Prague Stringology Conference 2015, Prague, Czech Republic, August 24-26, 2015. 2015; 5-16.

Keisuke Goto, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: LZD Factorization: Simple and Practical Online Grammar Compression with Variable-to-Fixed Encoding. Combinatorial Pattern Matching - 26th Annual Symposium, CPM 2015, Ischia Island, Italy, June 29 - July 1, 2015, Proceedings. 2015; 219-230. ( DOI )

Yoshiaki Matsuoka, Tomohiro I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Semi-dynamic Compact Index for Short Patterns and Succinct van Emde Boas Tree. Combinatorial Pattern Matching - 26th Annual Symposium, CPM 2015, Ischia Island, Italy, June 29 - July 1, 2015, Proceedings. 2015; 355-366. ( DOI )

Kunihiko Takahashi, Hideyasu Shimadzu: The daily incidence of out-of-hospital cardiac arrest unexpectedly increases around New Year's Day in Japan. Resuscitation. 2015; 96 156-162. ( PubMed , DOI )

Kaori Nomura, Kunihiko Takahashi, Yasushi Hinomura, Genta Kawaguchi, Yasuyuki Matsushita, Hiroko Marui, Tatsuhiko Anzai, Masayuki Hashiguchi, Mayumi Mochizuki: Effect of database profile variation on drug safety assessment: an analysis of spontaneous adverse event reports of Japanese cases. Drug Des Devel Ther. 2015; 9 3031-3041. ( PubMed , DOI )

Kaname Kojima, Yosuke Kawai, Naoki Nariai, Takahiro Mimori, Takanori Hasegawa, Masao Nagasaki: Short Tandem Repeat Number Estimation from Paired-end Sequence Reads by Considering Unobserved Genealogy of Multiple Individuals BIOINFORMATICS RESEARCH AND APPLICATIONS. 2015; 9096 422-423.

Yuka Tanimura, Yuta Fujishige, Tomohiro, I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: A Faster Algorithm for Computing Maximal alpha-gapped Repeats in a String STRING PROCESSING AND INFORMATION RETRIEVAL (SPIRE 2015). 2015; 9309 124-136. ( DOI )

Makoto Nishida, Tomohiro, I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Inferring Strings from Full Abelian Periods ALGORITHMS AND COMPUTATION, ISAAC 2015. 2015; 9472 768-779. ( DOI )

Hideo Bannai, Shunsuke Inenaga, Tomasz Kociumaka, Arnaud Lefebvre, Jakub Radoszewski, Wojciech Rytter, Shiho Sugimoto, Tomasz Walen: Efficient Algorithms for Longest Closed Factor Array STRING PROCESSING AND INFORMATION RETRIEVAL (SPIRE 2015). 2015; 9309 95-102. ( DOI )

Yuya Tamakoshi, Keisuke Goto, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: An Opportunistic Text Indexing Structure Based on Run Length Encoding ALGORITHMS AND COMPLEXITY (CIAC 2015). 2015; 9079 390-402. ( DOI )

Hideo Bannai, Travis Gagie, Shunsuke Inenaga, Juha Karkkainen, Dominik Kempa, Marcin Piatkowski, Simon J. Puglisi, Shiho Sugimoto: Diverse Palindromic Factorization Is NP-complete DEVELOPMENTS IN LANGUAGE THEORY (DLT 2015). 2015; 9168 85-96. ( DOI )

Hasegawa T, Mori T, Yamaguchi R, Imoto S, Miyano S, Akutsu T: An efficient data assimilation schema for restoration and extension of gene regulatory networks using time-course observation data. Journal of computational biology : a journal of computational molecular cell biology. 2014.11; 21 (11): 785-98. ( PubMed , DOI )

Takashi Kamatani, Hiroyoshi Iguchi, Takemichi Okada, Hitoshi Yamazaki, Hidekazu Tsunoda, Masaaki Watanabe, Masaya Oda, Makoto Ohbu, Hiroaki Yokomori: Co-registered positron emission tomography/computed tomography and gadolinium-ethoxybenzyl-diethylenetriamine pentaacetic acid magnetic resonance imaging features of multiple angiosarcoma of the liver. Hepatol Res. 2014.10; 44 (10): E297-E303. ( PubMed , DOI )

Hasegawa T, Nagasaki M, Yamaguchi R, Imoto S, Miyano S: An efficient method of exploring simulation models by assimilating literature and biological observational data. Bio Systems. 2014.07; 121 54-66. ( PubMed , DOI )

Kento Tokuyama, Satoshi Ohno, Katsunori Yoshikawa, Takashi Hirasawa, Shotaro Tanaka, Chikara Furusawa, Hiroshi Shimizu: Increased 3-hydroxypropionic acid production from glycerol, by modification of central metabolism in Escherichia coli. Microbial Cell Factories. 2014.05; 13 64. ( PubMed , DOI )

Satoshi Ohno, Hiroshi Shimizu, Chikara Furusawa: FastPros: screening of reaction knockout strategies for metabolic engineering. Bioinformatics. 2014.04; 30 (7): 981-987. ( PubMed , DOI )

Nobutaka Nakashima, Satoshi Ohno, Katsunori Yoshikawa, Hiroshi Shimizu, Tomohiro Tamura: A vector library for silencing central carbon metabolism genes with antisense RNAs in Escherichia coli. Applied and Environmental Microbiology. 2014.01; 80 (2): 564-573. ( PubMed , DOI )

Tomohiro, I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Inferring strings from suffix trees and links on a binary alphabet DISCRETE APPLIED MATHEMATICS. 2014.01; 163 316-325. ( DOI )

Eiichi Bannai, Etsuko Bannai, Hideo Bannai: On the existence of tight relative 2-designs on binary Hamming association schemes DISCRETE MATHEMATICS. 2014.01; 314 17-37. ( DOI )

Golnaz Badkobeh, Hideo Bannai, Keisuke Goto, Tomohiro I, Costas, S. Iliopoulos, Shunsuke Inenaga, Simon J. Puglisi, Shiho Sugimoto: Closed Factorization. Proceedings of the Prague Stringology Conference 2014, Prague, Czech Republic, September 1-3, 2014. 2014; 162-168.

Jun-ichi Yamamoto, Tomohiro I, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: Faster Compact On-Line Lempel-Ziv Factorization. 31st International Symposium on Theoretical Aspects of Computer Science (STACS 2014), STACS 2014, March 5-8, 2014, Lyon, France. 2014; 675-686. ( DOI )

Shohei Matsuda, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Computing Abelian Covers and Abelian Runs. Proceedings of the Prague Stringology Conference 2014, Prague, Czech Republic, September 1-3, 2014. 2014; 43-51.

Keisuke Goto, Hideo Bannai: Space Efficient Linear Time Lempel-Ziv Factorization for Small Alphabets. Data Compression Conference, DCC 2014, Snowbird, UT, USA, 26-28 March, 2014. 2014; 163-172. ( DOI )

Tatsuya Kubokawa, Mana Hasukawa, Kunihiko Takahashi: On measuring uncertainty of benchmarked predictors with application to disease risk estimate. Scandinavian Journal of Statistics. 2014; 41 394-413. ( DOI )

Daisuke Ogino, Kunihiko Takahashi, Hajime Sato: Characteristics of clinical trial websites: information distribution between ClinicalTrials.gov and 13 primary registries in the WHO registry network. Trials. 2014; 15 428. ( PubMed , DOI )

Tsutomu Nakashima, Hiroaki Sato, Kiyofumi Gyo, Naohito Hato, Tadao Yoshida, Mariko Shimono, Masaaki Teranishi, Michihiko Sone, Yukari Fukunaga, Gen Kobashi, Kunihiko Takahashi, Shigeyuki Matsui, Kaoru Ogawa: Idiopathic sudden sensorineural hearing loss in Japan. Acta Otolaryngol.. 2014; 134 (11): 1158-1163. ( PubMed , DOI )

Hasegawa T, Yamaguchi R, Nagasaki M, Miyano S, Imoto S: Inference of gene regulatory networks incorporating multi-source biological knowledge via a state space model with L1 regularization. PloS one. 2014; 9 (8): e105942. ( PubMed , DOI )

Tomohiro, I, Shiho Sugimoto, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Computing Palindromic Factorizations and Palindromic Covers On-line COMBINATORIAL PATTERN MATCHING, CPM 2014. 2014; 8486 150-161. ( DOI )

Kazuya Tsuruta, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Shortest Unique Substrings Queries in Optimal Time SOFSEM 2014: THEORY AND PRACTICE OF COMPUTER SCIENCE. 2014; 8327 503-513. ( DOI )

Yuto Nakashima, Takashi Okabe, Tomohiro, I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Inferring Strings from Lyndon Factorization MATHEMATICAL FOUNDATIONS OF COMPUTER SCIENCE, PT II. 2014; 8635 565-576. ( DOI )

Satoshi Ohno, Chikara Furusawa, Hiroshi Shimizu: In silico screening of triple reaction knockout Escherichia coli strains for overproduction of useful metabolites. J Biosci Bioeng. 2013.02; 115 (2): 221-228. ( PubMed , DOI )

Hiroshi Yokomichi, Tetsuji Yokoyama, Kunihiko Takahashi, Nobuo Yoshiike, Zentaro Yamagata, Toshiro Tango: An improved statistical method to estimate usual intake distribution of nutrients by age group Journal of Nutrition & Food Sciences. 2013; 3 196. ( DOI )

Kunihiko Takahashi, Hiroyuki Nakao, Satoshi Hattori: Cubic spline regression of J-shaped dose-response curves with likelihood-based assignments of grouped exposure levels Journal of Biometrics & Biostatistics. 2013; 4 181. ( DOI )

Tomohiro I, Takaaki Nishimoto, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Compressed Automata for Dictionary Matching. Implementation and Application of Automata - 18th International Conference, CIAA 2013, Halifax, NS, Canada, July 16-19, 2013. Proceedings. 2013; 319-330. ( DOI )

Shiho Sugimoto, Tomohiro I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Computing Reversed Lempel-Ziv Factorization Online. Proceedings of the Prague Stringology Conference 2013, Prague, Czech Republic, September 2-4, 2013. 2013; 107-118.

Toshiya Tanaka, Tomohiro I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Computing Convolution on Grammar-Compressed Text. 2013 Data Compression Conference, DCC 2013, Snowbird, UT, USA, March 20-22, 2013. 2013; 451-460. ( DOI )

Takashi Katsura, Kazuyuki Narisawa, Ayumi Shinohara, Hideo Bannai, Shunsuke Inenaga: Permuted Pattern Matching on Multi-track Strings. SOFSEM 2013: Theory and Practice of Computer Science, 39th International Conference on Current Trends in Theory and Practice of Computer Science, Špindlerův Mlýn, Czech Republic, January 26-31, 2013. Proceedings. 2013; 280-291. ( DOI )

Keisuke Goto, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: Fast q-gram mining on SLP compressed strings. J. Discrete Algorithms. 2013; 18 89-99. ( DOI )

Hideo Bannai, Pawel Gawrychowski, Shunsuke Inenaga, Masayuki Takeda: Converting SLP to LZ78 in almost Linear Time. Combinatorial Pattern Matching, 24th Annual Symposium, CPM 2013, Bad Herrenalb, Germany, June 17-19, 2013. Proceedings. 2013; 38-49. ( DOI )

Tomohiro, I, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Efficient Lyndon Factorization of Grammar Compressed Text COMBINATORIAL PATTERN MATCHING. 2013; 7922 153-164. ( DOI )

Tomohiro, I, Wataru Matsubara, Kouji Shimohira, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda, Kazuyuki Narisawa, Ayumi Shinohara: Detecting Regularities on Grammar-Compressed Strings MATHEMATICAL FOUNDATIONS OF COMPUTER SCIENCE 2013. 2013; 8087 571-582. ( DOI )

Tomohiro, I, Yuto Nakashima, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Faster Lyndon Factorization Algorithms for SLP and LZ78 Compressed Text STRING PROCESSING AND INFORMATION RETRIEVAL (SPIRE 2013). 2013; 8214 174-185. ( DOI )

Keisuke Goto, Hideo Bannai: Simpler and Faster Lempel Ziv Factorization 2013 DATA COMPRESSION CONFERENCE (DCC). 2013; 133-142. ( DOI )

Yuya Tamakoshi, Tomohiro, I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: From Run Length Encoding to LZ78 and Back Again 2013 DATA COMPRESSION CONFERENCE (DCC). 2013; 143-152. ( DOI )

Hideo Bannai, Travis Gagie, Tomohiro, I, Shunsuke Inenaga, Gad M. Landau, Moshe Lewenstein: An efficient algorithm to test square-freeness of strings compressed by straight-line programs INFORMATION PROCESSING LETTERS. 2012.10; 112 (19): 711-714. ( DOI )

Yuriko Saiki, Yuki Yoshino, Hiroko Fujimura, Tatsuya Manabe, Yuki Kudo, Miki Shimada, Nariyasu Mano, Tomohiro Nakano, Yoonha Lee, Shinjiro Shimizu, Shinya Oba, Sho Fujiwara, Hideyuki Shimizu, Na Chen, Zhaleh Kashkouli Nezhad, Guo Jin, Shinichi Fukushige, Makoto Sunamura, Masaharu Ishida, Fuyuhiko Motoi, Shinichi Egawa, Michiaki Unno, Akira Horii: DCK is frequently inactivated in acquired gemcitabine-resistant human cancer cells Biochem Biophys Res Commun.. 2012.04; 421 (1): 98-104. ( PubMed , DOI )

Shunsuke Inenaga, Hideo Bannai: FINDING CHARACTERISTIC SUBSTRINGS FROM COMPRESSED TEXTS INTERNATIONAL JOURNAL OF FOUNDATIONS OF COMPUTER SCIENCE. 2012.02; 23 (2): 261-280. ( DOI )

Toshiro Tango, Kunihiko Takahashi: A flexible spatial scan statistic with a restricted likelihood ratio for detecting disease clusters. Stat Med. 2012; 31 (30): 4207-4218. ( PubMed , DOI )

Yoko Anan, Kohei Hatano, Hideo Bannai, Masayuki Takeda, Ken Satoh: Polyphonic Music Classification on Symbolic Data Using Dissimilarity Functions. Proceedings of the 13th International Society for Music Information Retrieval Conference, ISMIR 2012, Mosteiro S.Bento Da Vitória, Porto, Portugal, October 8-12, 2012. 2012; 229-234.

Tomohiro I, Yuki Enokuma, Hideo Bannai, Masayuki Takeda: General Algorithms for Mining Closed Flexible Patterns under Various Equivalence Relations. Machine Learning and Knowledge Discovery in Databases - European Conference, ECML PKDD 2012, Bristol, UK, September 24-28, 2012. Proceedings, Part II. 2012; 435-450. ( DOI )

Keisuke Goto, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: Speeding Up q-Gram Mining on Grammar-Based Compressed Texts. Combinatorial Pattern Matching - 23rd Annual Symposium, CPM 2012, Helsinki, Finland, July 3-5, 2012. Proceedings. 2012; 220-231. ( DOI )

Kazuhito Hagio, Takashi Ohgami, Hideo Bannai, Masayuki Takeda: Eager XPath Evaluation over XML Streams STRING PROCESSING AND INFORMATION RETRIEVAL. 2012; 7608 245-250. ( DOI )

Keisuke Goto, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: Computing q-Gram Non-overlapping Frequencies on SLP Compressed Texts SOFSEM 2012: THEORY AND PRACTICE OF COMPUTER SCIENCE. 2012; 7147 301-312. ( DOI )

Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: Efficient LZ78 Factorization of Grammar Compressed Text STRING PROCESSING AND INFORMATION RETRIEVAL. 2012; 7608 86-98. ( DOI )

Yuto Nakashima, Tomohiro, I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: The Position Heap of a Trie STRING PROCESSING AND INFORMATION RETRIEVAL. 2012; 7608 360-371. ( DOI )

Tomohiro, I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Verifying and enumerating parameterized border arrays THEORETICAL COMPUTER SCIENCE. 2011.11; 412 (50): 6959-6981. ( DOI )

Shimizu H, Horii A, Sunamura M, Motoi F, Egawa S, Unno M, Fukushige S: Identification of epigenetically silenced genes in human pancreatic cancer by a novel method "microarray coupled with methyl-CpG targeted transcriptional activation" (MeTA-array) Biochem Biophys Res Commun.. 2011.07; 411 (1): 162-167. ( PubMed , DOI )

Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano: Poster: Comprehensive pharmacogenomic pathway screening by data assimilation IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences(ICCABS). 2011.02; 246.

Toshiro Tango, Kunihiko Takahashi, Kazuaki Kohriyama: A space-time scan statistic for detecting emerging outbreaks. Biometrics. 2011; 67 (1): 106-115. ( PubMed , DOI )

Takeshi Nishiyama, Kunihiko Takahashi, Toshiro Tango, Dalila Pinto, Stephen W Scherer, Satoshi Takami, Hirohisa Kishino: A scan statistic to extract causal gene clusters from case-control genome-wide rare CNV data. BMC Bioinformatics. 2011; 12 205. ( PubMed , DOI )

Hasegawa, T; Yamaguchi, R; Nagasaki, M; Imoto, S; Miyano, S: Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation BIOINFORMATICS RESEARCH AND APPLICATIONS. 2011; 6674 160-171.

Yoko Anan, Kohei Hatano, Hideo Bannai, Masayuki Takeda: Music Genre Classification using Similarity Functions. Proceedings of the 12th International Society for Music Information Retrieval Conference, ISMIR 2011, Miami, Florida, USA, October 24-28, 2011. 2011; 693-698.

Kouji Shimohira, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Computing Longest Common Substring/Subsequence of Non-linear Texts PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2011. 2011; 197-208.

Kazuhito Hagio, Takashi Ohgami, Hideo Bannai, Masayuki Takeda: Efficient Eager XPath Filtering over XML Streams PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2011. 2011; 30-44.

Tomohiro, I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Inferring Strings from Suffix Trees and Links on a Binary Alphabet PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2011. 2011; 121-131.

Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano: Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation BIOINFORMATICS RESEARCH AND APPLICATIONS. 2011; 6674 160-171.

Takanori Yamamoto, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: Faster Subsequence and Don't-Care Pattern Matching on Compressed Texts COMBINATORIAL PATTERN MATCHING, 22ND ANNUAL SYMPOSIUM, CPM 2011. 2011; 6661 309-322. ( DOI )

Keisuke Goto, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: Fast q-gram Mining on SLP Compressed Strings STRING PROCESSING AND INFORMATION RETRIEVAL. 2011; 7024 278-289. ( DOI )

Tomoko Tachibana, Kunihiko Takahashi, Toyoo Sakurayama: Factors causing the rapid turnover among novice nursing staff: analyses of the survey conducted in 2006 on the employment situation of nursing staff in the Tokyo metropolitan area. Journal of the National Institute of Public Health. 2010; 59 (2): 178-187. ( ichushi )

Yuriko Doi, Testuji Yokoyama, Toshiro Tango, Kunihiko Takahashi, Kenichi Fujimoto, Imaharu Nakano: Temporal trends and geographic clusters of mortality from amyotrophic lateral sclerosis in Japan, 1995-2004. J. Neurol. Sci.. 2010; 298 (1-2): 78-84. ( PubMed , DOI )

Kunihiko Takahashi, Toshiro Tango: Assignment of grouped exposure levels for trend estimation in a regression analysis of summarized data. Stat Med. 2010; 29 (25): 2605-2616. ( PubMed , DOI )

Takeo Fujiwara, Makiko Okuyama, Kunihiko Takahashi: Paternal involvement in childcare and unintentional injury of young children: a population-based cohort study in Japan. Int J Epidemiol. 2010; 39 (2): 588-597. ( PubMed , DOI )

Kazuaki Kashihara, Kohei Hatano, Hideo Bannai, Masayuki Takeda: Sparse Substring Pattern Set Discovery Using Linear Programming Boosting DISCOVERY SCIENCE, DS 2010. 2010; 6332 132-143. ( DOI )

Tomohiro, I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Counting and Verifying Maximal Palindromes STRING PROCESSING AND INFORMATION RETRIEVAL. 2010; 6393 135-+. ( DOI )

Tomohiro, I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Verifying a Parameterized Border Array in O(n(1.5)) Time COMBINATORIAL PATTERN MATCHING, PROCEEDINGS. 2010; 6129 238-+. ( DOI )

Hideo Bannai, Mathieu Giraud, Kazuhiko Kusano, Wataru Matsubara, Ayumi Shinohara, Jamie Simpson: The Number of Runs in a Ternary Word PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2010. 2010; 178-181.

Yoshimi Yashiro, Hideo Bannai, Takashi Minowa, Tomohide Yabiku, Satoru Miyano, Mitsujiro Osawa, Atsushi Iwama, Hiromitsu Nakauchi: Transcriptional profiling of hematopoietic stem cells by high-throughput sequencing International Journal of Hematology. 2009.01; 89 (1): 24-33. ( DOI )

Ryosuke Nakamura, Shunsuke Inenaga, Hideo Bannai, Takashi Funamoto, Masayuki Takeda, Ayumi Shinohara: Linear-Time Text Compression by Longest-First Substitution. Algorithms. 2009; 2 (4): 1429-1448. ( DOI )

Takanori Yamamoto, Hideo Bannai, Masao Nagasaki, Satoru Miyano: Better Decomposition Heuristics for the Maximum-Weight Connected Graph Problem Using Betweenness Centrality DISCOVERY SCIENCE, PROCEEDINGS. 2009; 5808 465-+. ( DOI )

Tomohiro, I, Satoshi Deguchi, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: Lightweight Parameterized Suffix Array Construction COMBINATORIAL ALGORITHMS. 2009; 5874 312-+. ( DOI )

Shunsuke Inenaga, Hideo Bannai: Finding Characteristic Substrings from Compressed Texts PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2009. 2009; 40-54.

Kazunori Hirashima, Hideo Bannai, Wataru Matsubara, Akira Ishino, Ayumi Shinohara: Bit-parallel algorithms for computing all the runs in a string PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2009. 2009; 203-213.

Tomohiro, I, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: Counting Parameterized Border Arrays for a Binary Alphabet LANGUAGE AND AUTOMATA THEORY AND APPLICATIONS. 2009; 5457 422-+. ( DOI )

Wataru Matsubara, Kazuhiko Kusano, Hideo Bannai, Ayumi Shinohara: A Series of Run-Rich Strings LANGUAGE AND AUTOMATA THEORY AND APPLICATIONS. 2009; 5457 578-+. ( DOI )

Eiichi Bannai, Etsuko Bannai, Hideo Bannai: Uniqueness of certain association schemes EUROPEAN JOURNAL OF COMBINATORICS. 2008.08; 29 (6): 1379-1395. ( DOI )

Yasuto Higa, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: Reachability on suffix tree graphs INTERNATIONAL JOURNAL OF FOUNDATIONS OF COMPUTER SCIENCE. 2008.02; 19 (1): 147-162. ( DOI )

Kunihiko Takahashi, Martin Kulldorff, Toshiro Tango, Katherine Yih: A flexibly shaped space-time scan statistic for disease outbreak detection and monitoring. Int J Health Geogr. 2008; 7 14. ( PubMed , DOI )

Y Doi, T Yokoyama, M Sakai, Y Nakamura, T Tango, K Takahashi: Spatial clusters of Creutzfeldt-Jakob disease mortality in Japan between 1995 and 2004. Neuroepidemiology. 2008; 30 (4): 222-228. ( PubMed , DOI )

Anzai T, Shimadzu H, Endo T: Modelling duration of necessary and non-necessary activities in daily life: fitting mixture models to Japanese time use survey data. Proceedings of the 23rd International Workshop on Statistical Modelling (Ed. P. Eilers). 2008; 93-98.

Wataru Matsubara, Kazuhiko Kusano, Akira Ishino, Hideo Bannai, Ayumi Shinohara: New Lower Bounds for the Maximum Number of Runs in a String PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2008. 2008; 140-145.

Kazuyuki Narisawa, Hideo Bannai, Kohei Hatano, Shunsuke Inenaga, Masayuki Takeda: String Kernels Based on Variable-Length-Don't-Care Patterns DISCOVERY SCIENCE, PROCEEDINGS. 2008; 5255 308-+. ( DOI )

Satoshi Deguchi, Fumihito Higashijima, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: Parameterized Suffix Arrays for Binary Strings PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2008. 2008; 84-94.

Tatsuya Akutsu, Hideo Bannai, Satoru Miyano, Sascha Ott: On the complexity of deriving position specific score matrices from positive and negative sequences DISCRETE APPLIED MATHEMATICS. 2007.04; 155 (6-7): 676-685. ( DOI )

Hideo Bannai: Algorithms for string pattern discovery Modeling Decisions for Artificial Intelligence, Proceedings. 2007; 4617 24-29. ( DOI )

Ryosuke Nakamura, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: Simple linear-time off-line text compression by longest-first substitution DCC 2007: DATA COMPRESSION CONFERENCE, PROCEEDINGS. 2007; 123-+. ( DOI )

Kazuyuki Narisawa, Hideo Bannai, Kohei Hatano, Masayuki Takeda: Unsupervised spam detection based on string alienness measures DISCOVERY SCIENCE, PROCEEDINGS. 2007; 4755 161-+. ( DOI )

Kazuyuki Narisawa, Shunsuke Inenaga, Hideo Barmai, Masayuki Takeda: Efficient computation of substring equivalence classes with suffix arrays COMBINATORIAL PATTERN MATCHING, PROCEEDINGS. 2007; 4580 340-+. ( DOI )

Yoshio Takei, Akatsuki Kawakoshi, Takehiro Tsukada, Shinya Yuge, Maho Ogoshi, Koji Inoue, Susumu Hyodo, Hideo Bannai, Satoru Miyano: Contribution of comparative fish studies to general endocrinology: structure and function of some osmoregulatory hormones Journal of Experimental Zoology Part A: Comparative Experimental Biology. 2006.09; 305A (9): 787-798. ( DOI )

Kunihiko Takahashi, Toshiro Tango: An extended power of cluster detection tests. Stat Med. 2006; 25 (5): 841-852. ( PubMed , DOI )

Yasuto Higa, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda: Reachability on suffix tree graphs. Proceedings of the Prague Stringology Conference, Prague, Czech Republic, August 28-30, 2006. 2006; 212-225.

Yasuto Higa, Shunsuke Inenaga, Hideo Bannai, Masayuki Takeda: A new family of string classifiers based on local relatedness DISCOVERY SCIENCE, PROCEEDINGS. 2006; 4265 114-124. ( DOI )

YOSHINORI TAMADA, HIDEO BANNAI, SEIYA IMOTO, TOSHIAKI KATAYAMA, MINORU KANEHISA, SATORU MIYANO: UTILIZING EVOLUTIONARY INFORMATION AND GENE EXPRESSION DATA FOR ESTIMATING GENE NETWORKS WITH BAYESIAN NETWORK MODELS Journal of Bioinformatics and Computational Biology. 2005.12; 03 (06): 1295-1313. ( DOI )

Toshiro Tango, Kunihiko Takahashi: A flexibly shaped spatial scan statistic for detecting clusters. Int J Health Geogr. 2005; 4 11. ( PubMed , DOI )

O Hirose, N Nariai, Y Tamada, H Bannai, S Imoto, S Miyano: Estimating gene networks from expression data and binding location data via Boolean networks COMPUTATIONAL SCIENCE AND ITS APPLICATIONS - ICCSA 2005, PT 3. 2005; 3482 349-356. ( DOI )

H Bannai, K Hatano, S Inenaga, M Takeda: Practical algorithms for pattern based linear regression DISCOVERY SCIENCE, PROCEEDINGS. 2005; 3735 44-56. ( DOI )

H Bannai, H Hyyro, A Shinohara, M Takeda, K Nakai, S Miyano: An O(N-2) algorithm for discovering optimal boolean pattern pairs IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS. 2004.10; 1 (4): 159-170. ( DOI )

Yoshio Takei, Koji Inoue, Maho Ogoshi, Tetsushi Kawahara, Hideo Bannai, Satoru Miyano: Identification of novel adrenomedullin in mammals: a potent cardiovascular and renal regulator FEBS Letters. 2004.01; 556 (1-3): 53-58. ( DOI )

Hideo Bannai, Shunsuke Inenaga, Ayumi Shinohara, Masayuki Takeda, Satoru Miyano: Efficiently Finding Regulatory Elements Using Correlation with Gene Expression. J. Bioinformatics and Computational Biology. 2004; 2 (2): 273-288. ( DOI )

H Bannai, H Hyyro, A Shinohara, M Takeda, K Nakai, S Miyano: Finding optimal pairs of patterns ALGORITHMS IN BIOINFORMATICS, PROCEEDINGS. 2004; 3240 450-462. ( DOI )

Shunsuke Inenaga, Hideo Bannai, Heikki Hyyrö, Ayumi Shinohara, Masayuki Takeda, Kenta Nakai, Satoru Miyano: Finding Optimal Pairs of Cooperative and Competing Patterns with Bounded Distance Discovery Science. 2004; 32-46. ( DOI )

Y. Tamada, S. Kim, H. Bannai, S. Imoto, K. Tashiro, S. Kuhara, S. Miyano: Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection Bioinformatics. 2003.09; 19 (Suppl 2): ii227-ii236. ( DOI )

Eijiro Sumii, Hideo Bannai: The Extension of ML with Hypothetical Views for Discovery Science: Formalization and Implementation. Journal of Functional and Logic Programming. 2003; 2003

Ott, S., Tamada, Y., Bannai, H., Nakai, K., Miyano, S.: Intrasplicing--analysis of long intron sequences. Pacific Symposium on Biocomputing. 2003; 339-350. ( DOI )

M Takeda, S Inenaga, H Bannai, A Shinohara, S Arikawa: Discovering most classificatory patterns for very expressive pattern classes DISCOVERY SCIENCE, PROCEEDINGS. 2003; 2843 486-493. ( DOI )

Hideo Bannai, Shunsuke Inenaga, Ayumi Shinohara, Masayuki Takeda: Inferring Strings from Graphs and Arrays Mathematical Foundations of Computer Science 2003. 2003; 208-217. ( DOI )

Hideo Bannai, Shunsuke Inenaga, Ayumi Shinohara, Masayuki Takeda, Satoru Miyano: A String Pattern Regression Algorithm and Its Application to Pattern Discovery in Long Introns Genome Informatics. 2002.12; 13 3-11. ( DOI )

Osamu Maruyama, Hideo Bannai, Yoshinori Tamada, Satoru Kuhara, Satoru Miyano: Fast algorithm for extracting multiple unordered short motifs using bit operations Information Sciences. 2002.10; 146 (1-4): 115-126. ( DOI )

H. Bannai, Y. Tamada, O. Maruyama, K. Nakai, S. Miyano: Extensive feature detection of N-terminal protein sorting signals Bioinformatics. 2002.02; 18 (2): 298-305. ( DOI )

Eijiro Sumii, Hideo Bannai: VM lambda: A Functional Calculusfor Scientific Discovery. Functional and Logic Programming, 6th International Symposium, FLOPS 2002, Aizu, Japan, September 15-17, 2002, Proceedings. 2002; 290-304. ( DOI )

O Maruyama, H Bannai, Y Tamada, S Kuhara, S Miyano: Fast algorithm for extracting multiple unordered short motifs using bit operations PROCEEDINGS OF THE 6TH JOINT CONFERENCE ON INFORMATION SCIENCES. 2002; 1180-1185.

S Inenaga, H Bannai, A Shmohara, M Takeda, S Arikawa: Discovering best variable-length-don't-care patterns DISCOVERY SCIENCE, PROCEEDINGS. 2002; 2534 86-97. ( DOI )

S Inenaga, A Shinohara, M Takeda, H Bannai, S Arikawa: Space-economical construction of index structures for all suffixes of a string MATHEMATICAL FOUNDATIONS OF COMPUTER SCIENCE 2002. 2002; 2420 341-352. ( DOI )

T Akutsu, H Bannai, S Miyano, S Ott: On the complexity of deriving position specific score matrices from examples COMBINATORIAL PATTERN MATCHING. 2002; 2373 168-177. ( DOI )

Toru Nakayashiki, Kanae Ebihara, Hideo Bannai, Yoshikazu Nakamura: Yeast [PSI+] “Prions” that Are Crosstransmissible and Susceptible beyond a Species Barrier through a Quasi-Prion State Molecular Cell. 2001.06; 7 (6): 1121-1130. ( DOI )

Masafumi Akahira, Kunihiko Takahashi: A higher order large-deviation approximation for the discrete distributions. Journal of the Japan Statistical Society. 2001; 31 (2): 257-267. ( DOI )

Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Satoru Miyano: HypothesisCreator: Concepts for Accelerating the Computational Knowledge Discovery Process. Electron. Trans. Artif. Intell.. 2001; 5 (B): 73-83.

Eijiro Sumii, Hideo Bannai: VM lambda: a Functional Calculus for Scientific Discovery. The Second Asian Workshop on Programming Languages and Systems, APLAS'01, Korea Advanced Institute of Science and Technology, Daejeon, Korea, December 17-18, 2001, Proceedings. 2001; 265-275.

Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Kenta Nakai, Satoru Miyano: Views: Fundamental Building Blocks in the Process of Knowledge Discovery. Proceedings of the Fourteenth International Florida Artificial Intelligence Research Society Conference, May 21-23, 2001, Key West, Florida, USA. 2001; 233-238.

Bannai, H., Tamada, Y., Maruyama, O., Miyano, S.: A system for supporting knowledge discovery from genomic data: software library Hypothesis Creator Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 2001; 46 (16 Suppl):

Bannai, H., Tamada, Y., Maruyama, O., Miyano, S.: VML: A View Modeling Language for computational knowledge discovery Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2001; 2226 30-44. ( DOI )

Tomohiro Yasuda, Hideo Bannai, Shuichi Onami, Satoru Miyano, Hiroaki Kitano: Towards Automatic Construction of Cell-Lineage of C. elegans from Nomarski DIC Microscope Images Genome Informatics. 1999.12; 10 144-154. ( DOI )

Masafumi Akahira, Kunihiko Takahashi, Kei Takeuchi: The higher order large-deviation approximation for the distribution of the sum of independent discrete random variables. Communications in Statistics - Theory and Methods. 1999; 28 705-726. ( DOI )

Kunihiko Takahashi: Randomized confidence intervals of a parameter for the negative binomial and logarithmic series distributions. Journal of the Japan Statistical Society. 1999; 29 (2): 201-212. ( DOI )

H Bannai, S Miyano: A definition of discovery in terms of generalized descriptional complexity DISCOVERY SCIENCE, PROCEEDINGS. 1999; 1721 316-318.

Masafumi Akahira, Hiroyuki Kashima, Kunihiko Takahashi: A generalized binomial distribution determined by a two-state Markov chain and a distribution by the Bayesian approach. Statistical Papers. 1997; 38 (1): 27-42. ( DOI )

Masafumi Akahira, Kunihiko Takahashi, Kei Takeuchi: Randomized confidence intervals of a parameter for a family of discrete exponential type distributions. Communications in Statistics - Simulation and Computation. 1997; 26 (3): 1103-1128. ( DOI )

Masataka Taguri,Kunihiko Takahashi, Sho Komukai,Yuri Ito, Satoshi Hattori, Ikuko Funatogawa,Tomohiro Shinozaki,Michio Yamamoto,Kenichi Hayashi.: Advancements of Biometrics in the Field of Epidemiology. Japanese Journal of Biometrics. 2024.03; 44 (2): 129-200.

佐伯 龍之介, 枝廣 龍哉, 曽根原 究人, 王 青波, 南宮 湖, 長谷川 嵩矩, 南谷 泰仁, 白石 友一, 木村 彰方, 井元 清哉, 宮野 悟, 金井 隆典, 福永 興壱, 岡田 随象, 小川 誠司: クローン性造血が新型コロナ感染症の重症化リスクに与える影響(The impact of clonal hematopoiesis on the risk of severe COVID-19) 日本癌学会総会記事. 2023.09; 82回 1761. ( ichushi )

Misato Irie, Hiroki Kabata, Kotaro Sasahara, Momoko Kurihara, Yoshitaka Shirasaki, Takashi Kamatani, Rie Baba, Masako Matsusaka, Satoshi Koga, Katsunori Masaki, Jun Miyata, Yasutomo Araki, Toru Kikawada, Yasuaki Kabe, Makoto Suematsu, Mai Yamagishi, Sotaro Uemura, Kazuyo Moro, Koichi Fukunaga: Annexin A1 is a cell-intrinsic metalloregulator of zinc in human ILC2s. Cell reports. 2023.06; 42 (6): 112610. ( PubMed , DOI )

Yu Hamba, Takashi Kamatani, Fuyuki Miya, Keith A Boroevich, Tatsuhiko Tsunoda: Topologically associating domain underlies tissue specific expression of long intergenic non-coding RNAs. iScience. 2023.05; 26 (5): 106640. ( PubMed , DOI )

Naoki Ikeda, Hiroaki Kubota, Risa Suzuki, Mitsuki Morita, Ayana Yoshimura, Yuya Osada, Keigo Kishida, Daiki Kitamura, Ayaka Iwata, Satoshi Yotsumoto, Daisuke Kurotaki, Koutarou Nishimura, Akira Nishiyama, Tomohiko Tamura, Takashi Kamatani, Tatsuhiko Tsunoda, Miyako Murakawa, Yasuhiro Asahina, Yoshihiro Hayashi, Hironori Harada, Yuka Harada, Asumi Yokota, Hideyo Hirai, Takao Seki, Makoto Kuwahara, Masakatsu Yamashita, Shigeyuki Shichino, Masato Tanaka, Kenichi Asano: The early neutrophil-committed progenitors aberrantly differentiate into immunoregulatory monocytes during emergency myelopoiesis. Cell reports. 2023.03; 42 (3): 112165. ( PubMed , DOI )

Kunihiko Takahashi, Takahiro Otani: Development of an integrated platform for rapid response in diseasters and acceidents. Chikyu Kankyo. 2023; 28 (2): 187-194.

Naofumi Kameyama, Takashi Sato, Daisuke Arai, Daisuke Fujisawa, Mari Takeuchi, Ichiro Nakachi, Ichiro Kawada, Hiroyuki Yasuda, Shinnosuke Ikemura, Hideki Terai, Shigenari Nukaga, Yasushi Nakano, Toshiyuki Hirano, Naoto Minematsu, Takanori Asakura, Takashi Kamatani, Kyuto Tanaka, Shoji Suzuki, Masayoshi Miyawaki, Katsuhiko Naoki, Koichi Fukunaga, Kenzo Soejima: Most Important Things and Associated Factors With Prioritizing Daily Life in Patients With Advanced Lung Cancer. JCO oncology practice. 2022.12; 18 (12): 851-+. ( PubMed , DOI )

Tomoki Urata, Diptarama Hendrian, Ryo Yoshinaka, Ayumi Shinohara: Strategy of the memory game in various settings 2022.11; 2022 35-42.

Hitoshi Matsuo, Takashi Kamatani, Yu Hamba, Keith A Boroevich, Tatsuhiko Tsunoda: Association between high immune activity and worse prognosis in uveal melanoma and low-grade glioma in TCGA transcriptomic data. BMC genomics. 2022.05; 23 (1): 351. ( PubMed , DOI )

内御堂亮, 長谷川嵩矩, 若林健二: Longitudinal data analysis for predicting mortality in patients with severe COVID-19 日本集中治療医学会学術集会(Web). 2022.03; 49th

大野聡: 代謝フラックスの定量によるトランスオミクスネットワークの理解 生物工学会誌. 2022;

Kyohei Hakozaki, Nobuyuki Tanaka, Kimiharu Takamatsu, Ryohei Takahashi, Yota Yasumizu, Shuji Mikami, Toshiaki Shinojima, Kazuhiro Kakimi, Takashi Kamatani, Fuyuki Miya, Tatsuhiko Tsunoda, Eriko Aimono, Hiroshi Nishihara, Ryuichi Mizuno, Mototsugu Oya: Landscape of prognostic signatures and immunogenomics of the AXL/GAS6 axis in renal cell carcinoma. British journal of cancer. 2021.11; 125 (11): 1533-1543. ( PubMed , DOI )

Kimiharu Takamatsu, Nobuyuki Tanaka, Kyohei Hakozaki, Ryohei Takahashi, Yu Teranishi, Tetsushi Murakami, Ryohei Kufukihara, Naoya Niwa, Shuji Mikami, Toshiaki Shinojima, Takashi Sasaki, Yusuke Sato, Haruki Kume, Seishi Ogawa, Kazuhiro Kakimi, Takashi Kamatani, Fuyuki Miya, Tatsuhiko Tsunoda, Eriko Aimono, Hiroshi Nishihara, Kazuaki Sawada, Takeshi Imamura, Ryuichi Mizuno, Mototsugu Oya: Profiling the inhibitory receptors LAG-3, TIM-3, and TIGIT in renal cell carcinoma reveals malignancy. Nature communications. 2021.09; 12 (1): 5547. ( PubMed , DOI )

Kota Ishioka, Hiroyuki Yasuda, Junko Hamamoto, Hideki Terai, Katsura Emoto, Tae-Jung Kim, Shigemichi Hirose, Takashi Kamatani, Sachiyo Mimaki, Daisuke Arai, Keiko Ohgino, Tetsuo Tani, Keita Masuzawa, Tadashi Manabe, Taro Shinozaki, Akifumi Mitsuishi, Toshiki Ebisudani, Takahiro Fukushima, Mari Ozaki, Shinnosuke Ikemura, Ichiro Kawada, Katsuhiko Naoki, Morio Nakamura, Takashi Ohtsuka, Hisao Asamura, Katsuya Tsuchihara, Yuichiro Hayashi, Ahmed E Hegab, Susumu S Kobayashi, Takashi Kohno, Hideo Watanabe, David M Ornitz, Tomoko Betsuyaku, Kenzo Soejima, Koichi Fukunaga: Upregulation of FGF9 in Lung Adenocarcinoma Transdifferentiation to Small Cell Lung Cancer. Cancer research. 2021.07; 81 (14): 3916-3929. ( PubMed , DOI )

Soichiro Susuki, Satoshi Ito, Kenichiro Sakai, Yue Inada, Ikuo Miyoshi, Yutaka Ishikawa, Satoru Miyano: Optimizationa and performance evaluation of whole genome sequence data analysis program Genomon on supercomputer FUGAKU High-Performance Computing of Informationn Processing Society of Japan. 2021.03; 2021-HPC-178 (18): 1-9.

Heewon Park, Koji Maruhashi, Rui Yamaguchi, Satoru Miyano: "Launch of new data-driven science": Realization of personal genome medicine/prevention by explainable AI Igakuno Ayumi. 2021.02; 276 (9): 849-853. ( ichushi )

Koji M Nishiguchi, Fuyuki Miya, Yuka Mori, Kosuke Fujita, Masato Akiyama, Takashi Kamatani, Yoshito Koyanagi, Kota Sato, Toru Takigawa, Shinji Ueno, Misato Tsugita, Hiroshi Kunikata, Katarina Cisarova, Jo Nishino, Akira Murakami, Toshiaki Abe, Yukihide Momozawa, Hiroko Terasaki, Yuko Wada, Koh-Hei Sonoda, Carlo Rivolta, Tatsuhiko Tsunoda, Motokazu Tsujikawa, Yasuhiro Ikeda, Toru Nakazawa: A hypomorphic variant in EYS detected by genome-wide association study contributes toward retinitis pigmentosa. Communications biology. 2021.01; 4 (1): 140. ( PubMed , DOI )

三森功士, 長山聡, 長谷川嵩矩, 新井田厚司, 小林雄太, 小林雄太, 増田隆明, 鈴木穣, 柴田龍弘: Evolution for fostering metastatic sites and the traits of detectable mutations in ctDNA in CRC 日本がん転移学会学術集会・総会プログラム抄録集. 2021; 30th

Satoru Miyano: Genome Revolution-Preventive and Medical Innovation: Footprints of the Genome Revolution and the Near Future of Prevention and Medical Care The Journal of Public Health Practice. 2020.04; 84 (4): 214-219. ( ichushi )

Improvements of Computer-aided Diagnosis for Colonoscopic Clinical Practice 2019.06; 128 (6): 421-429. ( ichushi )

ZHU Xin, YAGI Tohru, KATAYAMA Norihiro, SHIOZAWA Naruhiro, UCHIYAMA Takanori: Preface to Special Issue on LE2018 Symposium Transactions of the Society of Instrument and Control Engineers. 2019; 55 (9): 519. ( DOI )

Takanori Hasegawa, Kaname Kojima, Yosuke Kawai, Masao Nagasaki: Time-Series Filtering for Replicated Observations via a Kernel Approximate Bayesian Computation. IEEE Trans. Signal Process.. 2018.12; 66 (23): 6148-6161. ( DOI )

加藤 護, 永井 桃子, 長谷川 嵩矩, 井元 清哉, 松井 茂之, 角田 達彦, 柴田 龍弘: PCAWGデータを用いた予後バイオマーカーの網羅的探索(Comprehensive Search for Prognostic Biomarkers using PCAWG Data) 日本癌学会総会記事. 2018.09; 77回 358. ( ichushi )

藤田 征志, 井元 清哉, 山口 類, 長谷川 嵩矩, 林 周斗, 垣見 和宏, 宮野 悟, 山上 裕機, 茶山 一彰, 中川 英刀: 肝臓がんにおける免疫抑制機構のゲノム解析(Genomic insights into immune suppression in liver cancer) 日本癌学会総会記事. 2018.09; 77回 906. ( ichushi )

大野, others: 大腸菌による有用物質生産に向けた 3 重反応破壊の in silico スクリーニング (2014 生物工学論文賞) 生物工学会誌: Seibutsu-kogaku Kaishi. 2015;

Diptarama, Kazuyuki Narisawa, Shinohara Ayumi: Extension of Generalized Tic-Tac-Toe: p stones for one move IPSJ Journal. 2014; 55 (11): 2344.

Yunfan Bai, Keigo Morita, Toshiya Kokaji, Atsushi Hatano, Satoshi Ohno, Riku Egami, Yifei Pan, Dongzi Li, Katsuyuki Yugi, Saori Uematsu, Hiroshi Inoue, Yuka Inaba, Yutaka Suzuki, Masaki Matsumoto, Masatomo Takahashi, Yoshihiro Izumi, Takeshi Bamba, Akiyoshi Hirayama, Tomoyoshi Soga, Shinya Kuroda: Trans-omic analysis reveals opposite metabolic dysregulation between feeding and fasting in liver associated with obesity iScience. 2024.03; 27 (3): 109121. ( DOI )

Mitsuyoshi Imaizumi, Weihao Weng, Xin Zhu, Shigeyuki Murono: Effectiveness of FEES with artificial intelligence-assisted computer-aided diagnosis Auris Nasus Larynx. 2023.11; ( DOI )

Xue Zhou, Xin Zhu, Tianhui Li, Keijiro Nakamura, Ming Huang: Sex Difference in Atrial Fibrillation Recurrence After Catheter Ablation 2023 12th International Conference on Awareness Science and Technology (iCAST). 2023.11; ( DOI )

Zunyi Tang, Linlin Jiang, Xin Zhu, Ming Huang: An Internet of Things-Based Home Telehealth System for Smart Healthcare by Monitoring Sleep and Water Usage: A Preliminary Study Electronics. 2023.08; 12 (17): 3652. ( DOI )

Chiun-Li Chin, Chia-Chun Lin, Jing-Wen Wang, Wei-Cheng Chin, Yu-Hsiang Chen, Sheng-Wen Chang, Pei-Chen Huang, xin zhu, Yu-Lun Hsu, Shing-Hong Liu: A Wearable Assistant Device for the Hearing Impaired to Recognize Emergency Vehicle Sirens with Edge Computing Sensors. 2023.08; ( DOI )

Jia-Jung Wang, Shing-Hong Liu, Cheng-Hsien Tsai, Ioannis Manousakas, xin zhu, Thung-Lip Lee: Signal Quality Analysis of Single-Arm Electrocardiography Sensors. 2023.06; ( DOI )

朝田瑞穂, 朝田瑞穂, 長谷川嵩矩, 神山圭, 金森眸, 山本寛人, 内田篤治郎: Deep learning-based prediction model for intraoperative neuromuscular blockade 日本麻酔科学会学術集会(Web). 2023.06; 70th

Aihua Zhao, Xin Du, Suzhen Yuan, Wenfeng Shen, Xin Zhu, Wenwen Wang: Automated Detection of Endometrial Polyps from Hysteroscopic Videos Using Deep Learning Diagnostics. 2023.04; ( DOI )

Weihao Weng, Xin Zhu, Lei Jing, Mianxiong Dong: Attention Mechanism Trained with Small Datasets for Biomedical Image Segmentation Electronics. 2023.01; ( DOI )

Yiyang Liu, Boyuan Peng, Ziwei Liang, Xin Zhu 0001, Hiromasa Hayama, Keijiro Nakamura: Automatic Edge Detection in Echocardiographic Doppler Images Using an Improved Canny Algorithm. iCAST. 2023; 210-215. ( DOI )

中村啓二郎, 朱欣, 榎本善成, 原英彦, 諸井雅男, 杉薫, 中村正人: Is Artificial Intelligence Completely One-size-fits-all Approach for Analyzing Real World Data 日本循環器学会学術集会(Web). 2023; 87th

Keijiro Nakamura, Xue Zhou, Naohiko Sahara, Yasutake Toyoda, Yoshinari Enomoto, Hidehiko Hara, Mahito Noro, Kaoru Sugi, Ming Huang, Masao Moroi, Masato Nakamura, Xin Zhu: Risk of Mortality Prediction Involving Time-Varying Covariates for Patients with Heart Failure Using Deep Learning Diagnostics. 2022.11; 12 (12): 2947. ( DOI )

Rie Baba, Hiroki Kabata, Yoshitaka Shirasaki, Takashi Kamatani, Mai Yamagishi, Misato Irie, Risa Watanabe, Masako Matsusaka, Katsunori Masaki, Jun Miyata, Kazuyo Moro, Sotaro Uemura, Koichi Fukunaga: Upregulation of IL-4 receptor signaling pathway in circulating ILC2s from asthma patients Journal of Allergy and Clinical Immunology: Global. 2022.11; 1 (4): 299-304. ( PubMed , DOI )

Yang Lin, Menghan Yu, Yi Wang, Ziyue Meng, Ang Li, Zhonghai He, Qiaoyun Wang, Jian Liu, Yao Yu, Yuqian Zhao, Xin Zhu, Zhenhe Ma: High-speed all-optic optical coherence tomography and photoacoustic microscopy dual-modal system for microcirculation evaluation Journal of Innovative Optical Health Sciences. 2022.07; 15 (4): ( DOI )

Jian Liu, Shixin Yan, Nan Lu, Dongni Yang, Chunhui Fan, Hongyu Lv, Shuanglian Wang, Xin Zhu, Yuqian Zhao, Yi Wang, Zhenhe Ma, Yao Yu: Automatic segmentation of foveal avascular zone based on adaptive watershed algorithm in retinal optical coherence tomography angiography images Journal of Innovative Optical Health Sciences. 2022.01; 15 (1): ( DOI )

Xue Zhou, Xin Zhu, Keijiro Nakamura: Prediction of Hospitalization Cost and Length of Stay for Patients with Heart Failure Using Deep Learning LifeTech 2022 - 2022 IEEE 4th Global Conference on Life Sciences and Technologies. 2022; 158-161. ( DOI )

Xue Zhou, Xin Zhu, Keijiro Nakamura, Ming Huang: Gender Difference in Prognosis of Patients with Heart Failure: A Propensity Score Matching Analysis BHI-BSN 2022 - IEEE-EMBS International Conference on Biomedical and Health Informatics and IEEE-EMBS International Conference on Wearable and Implantable Body Sensor Networks, Symposium Proceedings. 2022; ( DOI )

Boyuan Peng, Yiyang Liu, Xin Zhu, Shouhei Ikeda, Saburo Tsunoda: Femoral segmentation of MRI images using PP-LiteSeg BHI-BSN 2022 - IEEE-EMBS International Conference on Biomedical and Health Informatics and IEEE-EMBS International Conference on Wearable and Implantable Body Sensor Networks, Symposium Proceedings. 2022; ( DOI )

S. M. Isuru Niroshana, Khanh N.Q. Le, Xin Zhu, Keijiro Nakamura, Wenxi Chen: A fused-image-based approach to detect obstructive sleep apnea using a single-lead ECG and a 2D convolutional neural network PLOS ONE. 2021.04; 16 (4 April): ( PubMed , DOI )

Aihua Zhao, Jian Zhang, Shixuan Wang, Yan Wang, Xin Zhu, Wenfeng Shen, Wenwen Wang: Detection of Hysteroscopic Hysteromyoma in Real-Time Based on Deep Learning Journal of Physics: Conference Series. 2021.04; 1861 (1): ( DOI )

Yaopeng Hu, Qin Li, Lin-Hai Kurahara, Narumi Shioi, Keizo Hiraishi, Takayuki Fujita, Xin Zhu, Ryuji Inoue: An Arrhythmic Mutation E7K Facilitates TRPM4 Channel Activation via Enhanced PIP2 Interaction Cells. 2021.04; 10 (5): ( PubMed , DOI )

Xingyu Wangchen, Wenfeng Shen, Hideaki Takasumi, Shinya Seino, Xin Zhu: Automatic combination strategy search in segmentation of Cardiac T1 mapping image Proceedings - 2021 4th International Conference on Advanced Electronic Materials, Computers and Software Engineering, AEMCSE 2021. 2021.03; 811-816. ( DOI )

Yuki NAKAJIMA, Daiki NEMOTO, Shinichi KATSUKI, Yoshikazu HAYASHI, Masato AIZAWA, Kenichi UTANO, Takahito TAKEZAWA, Yuichi SAGARA, Xin ZHU, Goro SHIBUKAWA, Hironori YAMAMOTO, Kazutomo TOGASHI: Which region does artificial intelligence look at to predict t1b colorectal cancer? analysis based on class activation mapping Gastroenterological Endoscopy. 2021; 63 (6): 1232-1240. ( DOI )

Weihao Weng, Xin Zhu: INet: Convolutional Networks for Biomedical Image Segmentation IEEE Access. 2021; 9 16591-16603. ( DOI )

Yao Sun, Xin Zhu, Keijiro Nakamura: Effects of myocardial fat's thickness and myocardial impedance on bipolar radiofrequency cathode ablation IEEE Region 10 Annual International Conference, Proceedings/TENCON. 2020.11; 2020-November 47-51. ( DOI )

Boyuan Peng, Zhe Guo, Xin Zhu, Shouhei Ikeda, Saburo Tsunoda: Semantic segmentation of femur bone from MRI images of patients with hematologic malignancies IEEE Region 10 Annual International Conference, Proceedings/TENCON. 2020.11; 2020-November 1090-1094. ( DOI )

Xue Zhou, Xin Zhu, Keijiro Nakamura, Mahito Noro: Determination of T Wave End by Multi-input Deep Learning Model 2020 IEEE 5th International Conference on Signal and Image Processing, ICSIP 2020. 2020.10; 898-902. ( DOI )

Lingfeng Liu, Xin Zhu, Qin Xia: An Integrated Design of Multi-Channel ECG Sensor on Smart Garment ACM International Conference Proceeding Series. 2020.09; 316-320. ( DOI )

Yuki Nakajima, Daiki Nemoto, Xin Zhu, Zhe Guo, Qin Li, Masato Aizawa, Kenichi Utano, Noriyuki Isohata, Shungo Endo, Goro Shibukawa, Shinichi Katsuki, Yuichi Sagara, Takahito Takezawa, Yoshikazu Hayashi, Hironori Yamamoto, David G. Hewett, Kazutomo Togashi: Sa2046 WHICH REGION DOES ARTIFICIAL INTELLIGENCE LOOK AT TO PREDICT T1B COLORECTAL CANCER?: ANALYSIS BASED ON CLASS ACTIVATION MAPPING. Gastrointestinal Endoscopy. 2020.06; 91 (6): AB257-AB258. ( DOI )

Zhe Guo, Ruiyao Zhang, Qin Li, Xinkai Liu, Daiki Nemoto, Kazutomo Togashi, S.M. Isuru Niroshana, Yuchen Shi, Xin Zhu: Reduce False-Positive Rate by Active Learning for Automatic Polyp Detection in Colonoscopy Videos 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI). 2020.04; 2020-April 1655-1658. ( DOI )

S. M.Isuru Niroshana, Xin Zhu, Ying Chen, Wenxi Chen: Sleep Stage Classification Based on EEG, EOG, and CNN-GRU Deep Learning Model 2019 IEEE 10th International Conference on Awareness Science and Technology, iCAST 2019 - Proceedings. 2019.10; ( DOI )

Baohua Liu, Wenfeng Shen, Xin Zhu, Xingyu Wangchen: Integrating intra-And intercellular simulation of a 2d hl-1 cardiac model based on embedded gpus Proceedings - 2019 IEEE 13th International Symposium on Embedded Multicore/Many-Core Systems-on-Chip, MCSoC 2019. 2019.10; 236-240. ( DOI )

Shuto Hayashi, Takuya Moriyama, Rui Yamaguchi, Shinichi Mizuno, Mitsuhiro Komura, Satoru Miyano, Hidewaki Nakagawa, Seiya Imoto: ALPHLARD-NT: Bayesian Method for Human Leukocyte Antigen Genotyping and Mutation Calling through Simultaneous Analysis of Normal and Tumor Whole-Genome Sequence Data Journal of Computational Biology. 2019.09; 26 (9): 923-937. ( DOI )

Baohua Liu, Wenfeng Shen, Peng Li, Xin Zhu: Accelerate Mini-batch Machine Learning Training With Dynamic Batch Size Fitting 2019 International Joint Conference on Neural Networks (IJCNN). 2019.07; 2019-July ( DOI )

S.M. Isuru Niroshana, Xin Zhu, Yin Chen, Wenxi Chen: Automatic Sleep Stage Classification Based on Convolutional Neural Networks 2019 IEEE 1st Global Conference on Life Sciences and Technologies (LifeTech). 2019.03; 275-276. ( DOI )

Xue Zhou, Xin Zhu, Keijiro Nakamura, Mahito Noro: Detect the Premature Ventricular Contraction Using Recurrent Neural Networks Journal of Electrocardiology. 2019.03; 53 e4-e5. ( DOI )

Zhe Guo, Xin Zhu, Qin Li, Daiki Nemoto, Daisuke Takayanagi, Masato Aizawa, Noriyuki Isohata, Kenichi Utano, Kensuke Kumamoto, Shungo Endo, Kazutomo Togashi: Automatic polyp recognition from Colonoscopy images based on bag of visual words International Journal of Applied Science and Engineering. 2019; 16 (1): 69-81. ( DOI )

勝川史憲, 森野勝太郎, 卯木智, 前川聡, 近藤慶子, 西田香, 大井彰子, 栗原美香, 佐々木雅也, 中江悟司, 西田優紀, 山田陽介, 田中茂穂, 海老根直之, 佐々木敏: Studies on energy balance in nursing home residents, patients with COPD and diabetes 糖尿病(Web). 2019; 62 (Suppl):

Kazunori Ohno, Ryunosuke Hamada, Tatsuya Hoshi, Hiroyuki Nishinoma, Shumpei Yamaguchi, Solvi Arnold, Kimitoshi Yamazaki, Takefumi Kikusui, Satoko Matsubara, Miho Nagasawa, Takatomi Kubo, Eri Nakahara, Yuki Maruno, Kazushi Ikeda, Toshitaka Yamakawa, Takeshi Tokuyama, Ayumi Shinohara, Ryo Yoshinaka, Diptarama Hendrian, Kaizaburo Chubachi, Satoshi Kobayashi, Katsuhito Nakashima, Hiroaki Naganuma, Ryu Wakimoto, Shu Ishikawa, Tatsuki Miura, Satoshi Tadokoro: Cyber-Enhanced Rescue Canine. Disaster Robotics. 2019; 143-193. ( DOI )

Shuto Hayashi, Rui Yamaguchi, Shinichi Mizuno, Mitsuhiro Komura, Satoru Miyano, Hidewaki Nakagawa, Seiya Imoto: ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data BMC Genomics. 2018.11; 19 (1): ( DOI )

Feng Qiu, Baohua Liu, Wenfeng Shen, Yanghua Shen, Yaopeng Hu, Xin Zhu: Parallel acceleration on simulation of a 2D Takeuchi electrophysiology cardiac model using GPUs 2017 3rd IEEE International Conference on Computer and Communications, ICCC 2017. 2018.03; 2018-January 2665-2668. ( DOI )

Feng Qiu, Baohua Liu, Wenfeng Shen, Yanghua Shen, Yaopeng Hu, Xin Zhu: A study on the simulation of HL-1 unicellular model based on numerical methods Proceedings - 2017 10th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics, CISP-BMEI 2017. 2018.02; 2018-January 1-5. ( DOI )

Wenfeng Shen, Feng Qiu, Yaopeng Hu, Yanghua Shen, Xin Zhu: Energy efficient simulation computing of electrocardiogram with TK1 Board IAENG International Journal of Computer Science. 2018.02; 45 (1): 177-187.