Personnel Information

写真a

NIKAIDO Itoshi


Job title

Professor

Homepage URL

https://bit.riken.jp/

Research Areas, Keywords

Bioinformatics, Genomics

Graduate School 【 display / non-display

  • Yokohama City University, Science of Biological Supramolecular Systems, Doctor's Course, 2004.03, Completed

Campus Career 【 display / non-display

  • 2020.04
    -
    Now
    Tokyo Medical and Dental University, Medical Research Institute, Medical Genomics, , Professor

External Career 【 display / non-display

  • 2004.04
    -
    2006.05
    Research Center for Genomic Medicine, Saitama Medical School, Division of Functional Genomics & Systems Medicine, Research Scientist
  • 2006.06
    -
    2013.03
    RIKEN Center for Developmental Biology, Functional Genomic Unit, Research Scientist
  • 2013.04
    -
    2018.03
    RIKEN Advanced Center for Computing and Communication, Bioinformatics Research Unit, Unit Leader
  • 2017.06
    -
    2018.03
    RIKEN Center for Developmental Biology, Single-cell Omics Unit, Unit Leader
  • 2018.04
    -
    2019.03
    RIKEN Center for Biosystems Dynamics Research, Laboratory for Bioinformatics Research, Unit Leader

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Academic Society Affiliations 【 display / non-display

  • The Molecular Biology Society of Japan

  • The Japanese Society for Regenerative Medicine

Research Areas 【 display / non-display

  • System genome science

 

Published Papers & Misc 【 display / non-display

  • Sawada Tomoyo, Chater Thomas E., Sasagawa Yohei, Yoshimura Mika, Fujimori-Tonou Noriko, Tanaka Kaori, Benjamin Kynon J. M., Paquola Apua C. M., Erwin Jennifer A., Goda Yukiko, Nikaido Itoshi, Kato Tadafumi. Developmental excitation-inhibition imbalance underlying psychoses revealed by single-cell analyses of discordant twins-derived cerebral organoids MOLECULAR PSYCHIATRY. 2020.08; 25 (11): 2695-2711. ( PubMed, DOI )

  • Mereu Elisabetta, Lafzi Atefeh, Moutinho Catia, Ziegenhain Christoph, McCarthy Davis J., Alvarez-Varela Adrian, Batlle Eduard, Sagar, Gruen Dominic, Lau Julia K., Boutet Stephane C., Sanada Chad, Ooi Aik, Jones Robert C., Kaihara Kelly, Brampton Chris, Talaga Yasha, Sasagawa Yohei, Tanaka Kaori, Hayashi Tetsutaro, Braeuning Caroline, Fischer Cornelius, Sauers Sascha, Trefzer Timo, Conrad Christian, Adiconis Xian, Nguyen Lan T., Regev Aviv, Levin Joshua Z., Parekh Swati, Janjic Aleksandar, Wange Lucas E., Bagnoli Johannes W., Enard Wolfgang, Gut Marta, Sandberg Rickard, Nikaido Itoshi, Gut Ivo, Stegle Oliver, Heyn Holger. Benchmarking single-cell RNA-sequencing protocols for cell atlas projects NATURE BIOTECHNOLOGY. 2020.06; 38 (6): 747-+. ( PubMed, DOI )

  • Michida Hiroki, Imoto Hiroaki, Shinohara Hisaaki, Yumoto Noriko, Seki Masahide, Umeda Mana, Hayashi Tetsutaro, Nikaido Itoshi, Kasukawa Takeya, Suzuki Yutaka, Okada-Hatakeyama Mariko. The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression CELL REPORTS. 2020.06; 31 (9): 107724. ( PubMed, DOI )

  • Shiozawa Seiji, Nakajima Mayutaka, Okahara Junko, Kuortaki Yoko, Kisa Fumihiko, Yoshimatsu Sho, Nakamura Mari, Koya Ikuko, Yoshimura Mika, Sasagawa Yohei, Nikaido Itoshi, Sasaki Erika, Okano Hideyuki. Primed to Naive-Like Conversion of the Common Marmoset Embryonic Stem Cells STEM CELLS AND DEVELOPMENT. 2020.06; 29 (12): 761-773. ( PubMed, DOI )

  • Ochiai Hiroshi, Hayashi Tetsutaro, Umeda Mana, Yoshimura Mika, Harada Akihito, Shimizu Yukiko, Nakano Kenta, Saitoh Noriko, Liu Zhe, Yamamoto Takashi, Okamura Tadashi, Ohkawa Yasuyuki, Kimura Hiroshi, Nikaido Itoshi. Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells SCIENCE ADVANCES. 2020.06; 6 (25): eaaz6699. ( PubMed, DOI )

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Conference Activities & Talks 【 display / non-display

  • 森田 梨津子, 三千 典子, 林 哲太郎, 梅田 茉奈, 芳村 美佳, 二階堂 愛, 阿部 高也, 清成 寛, 古田 泰秀, 藤原 裕展. 毛包幹細胞の起源と誘導メカニズムの解明. 生命科学系学会合同年次大会 2017.12.01

 

Campus class subject 【 display / non-display

  • Functional Genome Informatics

  • Biomedical Science

External class subject 【 display / non-display

  • Gene analysis and functional genomics,Master's/Doctoral Program in Life Science Innovation (Bioinformatics), Degree Programs in Systems and Information Engineering, Graduate School of Science and Technology, University of Tsukuba