Published Papers & Misc - HASEGAWA Takanori

21. Ho Namkoong , Ryuya Edahiro , Koichi Fukunaga , Yuya Shirai , Kyuto Sonehara , Hiromu Tanaka , Ho Lee , Takanori Hasegawa , Masahiro Kanai , Tatsuhiko Naito , Kenichi Yamamoto , Ryunosuke Saiki , Takayoshi Hyugaji , Eigo Shimizu , Kotoe Katayama , Kazuhisa Takahashi , Norihiro Harada , Toshio Naito , Makoto Hiki , Yasushi Matsushita , Haruhi Takagi , Ryousuke Aoki , Ai Nakamura , Sonoko Harada , Hitoshi Sasano , Hiroki Kabata , Katsunori Masaki , Hirofumi Kamata , Shinnosuke Ikemura , Shotaro Chubachi , Satoshi Okamori , Hideki Terai , Atsuho Morita , Takanori Asakura , Junichi Sasaki , Hiroshi Morisaki , Yoshifumi Uwamino , Kosaku Nanki , Yohei Mikami , Sho Uchida , Shunsuke Uno , Rino Ishihara , Yuta Matsubara , Tomoyasu Nishimura , Takanori Ogawa , Takashi Ishiguro , Taisuke Isono , Shun Shibata , Yuma Matsui , Chiaki Hosoda , Kenji Takano , Takashi Nishida , Yoichi Kobayashi , Yotaro Takaku , Noboru Takayanagi , Soichiro Ueda , Ai Tada , Masayoshi Miyawaki , Masaomi Yamamoto , Eriko Yoshida , Reina Hayashi , Tomoki Nagasaka , Sawako Arai , Yutaro Kaneko , Kana Sasaki , Etsuko Tagaya , Masatoshi Kawana , Ken Arimura , Kunihiko Takahashi , Tatsuhiko Anzai , Satoshi Ito , Akifumi Endo , Yuji Uchimura , Yasunari Miyazaki , Takayuki Honda , Tomoya Tateishi , Shuji Tohda , Naoya Ichimura , Kazunari Sonobe , Chihiro Sassa , Jun Nakajima , Yasushi Nakano , Yukiko Nakajima , Ryusuke Anan , Ryosuke Arai , Yuko Kurihara , Yuko Harada , Kazumi Nishio , Tetsuya Ueda , Masanori Azuma , Ryuichi Saito , Toshikatsu Sado , Yoshimune Miyazaki , Ryuichi Sato , Yuki Haruta , Tadao Nagasaki , Yoshinori Yasui , Yoshinori Hasegawa , Yoshikazu Mutoh , Tomonori Sato , Reoto Takei , Satoshi Hagimoto , Yoichiro Noguchi , Yasuhiko Yamano , Hajime Sasano , Sho Ota , Yasushi Nakamori , Kazuhisa Yoshiya , Fukuki Saito , Tomoyuki Yoshihara , Daiki Wada , Hiromu Iwamura , Syuji Kanayama , Shuhei Maruyama , Takashi Yoshiyama , Ken Ohta , Hiroyuki Kokuto , Hideo Ogata , Yoshiaki Tanaka , Kenichi Arakawa , Masafumi Shimoda , Takeshi Osawa , Hiroki Tateno , Isano Hase , Shuichi Yoshida , Shoji Suzuki , Miki Kawada , Hirohisa Horinouchi , Fumitake Saito , Keiko Mitamura , Masao Hagihara , Junichi Ochi , Tomoyuki Uchida , Rie Baba , Daisuke Arai , Takayuki Ogura , Hidenori Takahashi , Shigehiro Hagiwara , Genta Nagao , Shunichiro Konishi , Ichiro Nakachi , Koji Murakami , Mitsuhiro Yamada , Hisatoshi Sugiura , Hirohito Sano , Shuichiro Matsumoto , Nozomu Kimura , Yoshinao Ono , Hiroaki Baba , Yusuke Suzuki , Sohei Nakayama , Keita Masuzawa , Shinichi Namba , Ken Suzuki , Nobuyuki Hizawa , Takayuki Shiroyama , Satoru Miyawaki , Yusuke Kawamura , Akiyoshi Nakayama , Hirotaka Matsuo , Yuichi Maeda , Takuro Nii , Yoshimi Noda , Takayuki Niitsu , Yuichi Adachi , Takatoshi Enomoto , Saori Amiya , Reina Hara , Toshihiro Kis. Japan COVID-19 Task Force: a nation-wide consortium to elucidate host genetics of COVID-19 pandemic in Japan 2021.05;

22. Shotaro Sakimura, Satoshi Nagayama, Mitsuko Fukunaga, Qingjiang Hu, Akihiro Kitagawa, Yuta Kobayashi, Takanori Hasegawa, Miwa Noda, Yuta Kouyama, Dai Shimizu, Tomoko Saito, Atsushi Niida, Yusuke Tsuruda, Hajime Otsu, Yoshihiro Matsumoto, Hiroki Uchida, Takaaki Masuda, Keishi Sugimachi, Shin Sasaki, Kazutaka Yamada, Kazuki Takahashi, Hideki Innan, Yutaka Suzuki, Hiromi Nakamura, Yasushi Totoki, Shinichi Mizuno, Masanobu Ohshima, Tatsuhiro Shibata, Koshi Mimori. Impaired tumor immune response in metastatic tumors is a selective pressure for neutral evolution in CRC cases. PLoS Genet. 2021.01; 17 (1): e1009113. ( PubMed, DOI )

23. Imoto S, Hasegawa T, Yamaguchi R. Data science and precision health care. Nutrition reviews. 2020.12; 78 (12 Suppl 2): 53-57. ( PubMed, DOI )

24. Sato N, Kakuta M, Hasegawa T, Yamaguchi R, Uchino E, Murashita K, Nakaji S, Imoto S, Yanagita M, Okuno Y. Metagenomic profiling of gut microbiome in early chronic kidney disease. Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association. 2020.09; 36 (9): 1675-1684. ( PubMed, DOI )

25. Hasegawa T, Hayashi S, Shimizu E, Mizuno S, Niida A, Yamaguchi R, Miyano S, Nakagawa H, Imoto S. Neoantimon: a multifunctional R package for identification of tumor-specific neoantigens. Bioinformatics (Oxford, England). 2020.09; 36 (18): 4813-4816. ( PubMed, DOI )

26. Misawa K, Hasegawa T, Mishima E, Jutabha P, Ouchi M, Kojima K, Kawai Y, Matsuo M, Anzai N, Nagasaki M. Contribution of Rare Variants of the SLC22A12 Gene to the Missing Heritability of Serum Urate Levels. Genetics. 2020.04; 214 (4): 1079-1090. ( PubMed, DOI )

27. Fujita Masashi, Yamaguchi Rui, Hasegawa Takanori, Shimada Shu, Arihiro Koji, Hayashi Shuto, Maejima Kazuhiro, Nakano Kaoru, Fujimoto Akihiro, Ono Atsushi, Aikata Hiroshi, Ueno Masaki, Hayami Shinya, Tanaka Hiroko, Miyano Satoru, Yamaue Hiroki, Chayama Kazuaki, Kakimi Kazuhiro, Tanaka Shinji, Imoto Seiya, Nakagawa Hidewaki. Classification of primary liver cancer with immunosuppression mechanisms and correlation with genomic alterations EBIOMEDICINE. 2020.03; 53 102659. ( PubMed, DOI )

28. Sato N, Kakuta M, Hasegawa T, Yamaguchi R, Uchino E, Kobayashi W, Sawada K, Tamura Y, Tokuda I, Murashita K, Nakaji S, Imoto S, Yanagita M, Okuno Y. Metagenomic analysis of bacterial species in tongue microbiome of current and never smokers. NPJ biofilms and microbiomes. 2020.03; 6 (1): 11. ( PubMed, DOI )

29. Akihiro Fujimoto, Masashi Fujita, Takanori Hasegawa, Jing Hao Wong, Kazuhiro Maejima, Aya Oku-Sasaki, Kaoru Nakano, Yuichi Shiraishi, Satoru Miyano, Go Yamamoto, Kiwamu Akagi, Seiya Imoto, Hidewaki Nakagawa. Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types. Genome Res. 2020.03; 30 (3): 334-346. ( PubMed, DOI )

30. Pan-cancer analysis of whole genomes. Nature. 2020.02; 578 (7793): 82-93. ( PubMed, DOI )

31. Noriaki Sato, Masanori Kakuta, Eiichiro Uchino, Takanori Hasegawa, Ryosuke Kojima, Wataru Kobayashi, Kaori Sawada, Yoshihiro Tamura, Itoyo Tokuda, Seiya Imoto, Shigeyuki Nakaji, Koichi Murashita, Motoko Yanagita, Yasushi Okuno. The relationship between cigarette smoking and the tongue microbiome in an East Asian population. J Oral Microbiol. 2020; 12 (1): 1742527. ( PubMed, DOI )

32. Takanori Hasegawa, Rui Yamaguchi, Masanori Kakuta, Kaori Sawada, Kenichi Kawatani, Koichi Murashita, Shigeyuki Nakaji, Seiya Imoto. Prediction of blood test values under different lifestyle scenarios using time-series electronic health record. PLoS One. 2020; 15 (3): e0230172. ( PubMed, DOI )

33. Sunao Shimizu, Junsei Mimura, Takanori Hasegawa, Eigo Shimizu, Seiya Imoto, Michiko Tsushima, Shuya Kasai, Hiromi Yamazaki, Yusuke Ushida, Hiroyuki Suganuma, Hirofumi Tomita, Masayuki Yamamoto, Shigeyuki Nakaji, Ken Itoh. Association of single nucleotide polymorphisms in the NRF2 promoter with vascular stiffness with aging. PLoS One. 2020; 15 (8): e0236834. ( PubMed, DOI )

34. Atsushi Niida, Takanori Hasegawa, Hideki Innan, Tatsuhiro Shibata, Koshi Mimori, Satoru Miyano. A unified simulation model for understanding the diversity of cancer evolution. PeerJ. 2020; 8 (4): e8842. ( PubMed, DOI )

35. Tomoko Saito, Atsushi Niida, Ryutaro Uchi, Hidenari Hirata, Hisateru Komatsu, Shotaro Sakimura, Shuto Hayashi, Sho Nambara, Yosuke Kuroda, Shuhei Ito, Hidetoshi Eguchi, Takaaki Masuda, Keishi Sugimachi, Taro Tobo, Haruto Nishida, Tsutomu Daa, Kenichi Chiba, Yuichi Shiraishi, Tetsuichi Yoshizato, Masaaki Kodama, Tadayoshi Okimoto, Kazuhiro Mizukami, Ryo Ogawa, Kazuhisa Okamoto, Mitsutaka Shuto, Kensuke Fukuda, Yusuke Matsui, Teppei Shimamura, Takanori Hasegawa, Yuichiro Doki, Satoshi Nagayama, Kazutaka Yamada, Mamoru Kato, Tatsuhiro Shibata, Masaki Mori, Hiroyuki Aburatani, Kazunari Murakami, Yutaka Suzuki, Seishi Ogawa, Satoru Miyano, Koshi Mimori. A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer. Nat Commun. 2020; 9 (1): 2884. ( PubMed, DOI )

36. Hasegawa Takanori, Yamaguchi Rui, Niida Atsushi, Miyano Satoru, Imoto Seiya. Ensemble smoothers for inference of hidden states and parameters in combinatorial regulatory model. JOURNAL OF THE FRANKLIN INSTITUTE-ENGINEERING AND APPLIED MATHEMATICS. 2020; 357 (5): 2916-2933. ( DOI )

37. Atsushi Niida, Takanori Hasegawa, Satoru Miyano. Sensitivity analysis of agent-based simulation utilizing massively parallel computation and interactive data visualization. PLoS One. 2019; 14 (3): e0210678. ( PubMed, DOI )

38. Masashi Fujita, Seiya Imoto, Rui Yamaguchi, Takanori Hasegawa, Shuto Hayashi, Kazuhiro Kakimi, Satoru Miyano, Hiroki Yamaue, Kazuaki Chayama, Hidewaki Nakagawa. Genomic insights into immune suppression in liver cancer CANCER SCIENCE. 2018.12; 109 640.

39. Comprehensive Search for Prognostic Biomarkers using PCAWG Data 2018.12; 109 291.

40. Genomic insights into immune suppression in liver cancer 2018.12; 109 640.