Personnel Information

写真a

TSUNODA TATSUHIKO


Job title

Professor

Graduating School 【 display / non-display

  • The University of Tokyo, Faculty of Science, Graduated

Graduate School 【 display / non-display

  • The University of Tokyo, Graduate School, Division of Science, Master's Course, Completed

  • The University of Tokyo, Graduate School, Division of Engineering, Doctor's Course, Completed

Degree 【 display / non-display

  • Ph.D.(Medicine)

  • Ph.D.(Engineering)

Campus Career 【 display / non-display

  • 2015.07
    -
    Now
    Tokyo Medical and Dental University, Medical Research Institute, Medical Genomics, Medical Science Mathematics, Professor
  • 2015.12
    -
    2018.03
    Tokyo Medical and Dental University, Graduate School of Medical and Dental Sciences, Life Science and Technology, Life Science and Technology, Medical Science Mathematics, Professor
  • 2018.04
    -
    Now
    Tokyo Medical and Dental University, Graduate School of Medical and Dental Sciences, Medical and Dental Science and Technology, -, Professor

External Career 【 display / non-display

  • 2019.04
    -
    Now
    The University of Tokyo, Medical Science Mathematics, Department of Biological Sciences, Graduate School of Science, Professor
 

Published Papers & Misc 【 display / non-display

  • Alok Sharma, Artem Lysenko, Keith A Boroevich, Edwin Vans, Tatsuhiko Tsunoda. DeepFeature: feature selection in nonimage data using convolutional neural network. Brief Bioinform. 2021.08; ( PubMed, DOI )

  • Jun Hosoe, Ken Suzuki, Fuyuki Miya, Takashi Kato, Tatsuhiko Tsunoda, Yukinori Okada, Momoko Horikoshi, Nobuhiro Shojima, Toshimasa Yamauchi, Takashi Kadowaki. Structural basis of ethnic-specific variants of PAX4 associated with type 2 diabetes. Hum Genome Var. 2021.07; 8 (1): 25. ( PubMed, DOI )

  • Tetsushi Murakami, Nobuyuki Tanaka, Kimiharu Takamatsu, Kyohei Hakozaki, Keishiro Fukumoto, Tsukasa Masuda, Shuji Mikami, Toshiaki Shinojima, Kazuhiro Kakimi, Tatsuhiko Tsunoda, Kazuaki Sawada, Takeshi Imamura, Ryuichi Mizuno, Mototsugu Oya. Multiplexed single-cell pathology reveals the association of CD8 T-cell heterogeneity with prognostic outcomes in renal cell carcinoma. Cancer Immunol Immunother. 2021.07; ( PubMed, DOI )

  • Shiu Kumar, Ronesh Sharma, Tatsuhiko Tsunoda, Thirumananseri Kumarevel, Alok Sharma. Forecasting the spread of COVID-19 using LSTM network. BMC Bioinformatics. 2021.06; 22 (Suppl 6): 316. ( PubMed, DOI )

  • Shiu Kumar, Tatsuhiko Tsunoda, Alok Sharma. SPECTRA: a tool for enhanced brain wave signal recognition. BMC Bioinformatics. 2021.06; 22 (Suppl 6): 195. ( PubMed, DOI )

display all >>

Books etc 【 display / non-display

  • Tatsuhiko Tsunoda, Toshihiro Tanaka, Yusuke Nakamura (Eds.). Genome-Wide Association Studies. Springer Nature, 2019.11 (ISBN : 978-9811381768)

  • Vans E., Sharma A., Patil A., Shigemizu D., Tsunoda T. Subject-Specific-Frequency-Band for Motor Imagery EEG Signal Recognition Based on Common Spatial Spectral Pattern. In: Nayak A., Sharma A. (eds) PRICAI 2019: Trends in Artificial Intelligence. PRICAI 2019. Lecture Notes in Computer Science. Springer, 2019.08

  • Singh V, Sharma A, Chandra A, Dehzangi A, Shigemizu D, Tsunoda T. Computational Prediction of Lysine Pupylation Sites in Prokaryotic Proteins Using Position Specific Scoring Matrix into Bigram for Feature Extraction. In: Nayak A., Sharma A. (eds) PRICAI 2019: Trends in Artificial Intelligence. PRICAI 2019. Lecture Notes in Computer Science. Springer, 2019.08 (ISBN : 978-3-030-29893-7)

  • Vans E., Sharma A., Patil A., Shigemizu D., Tsunoda T. Clustering of Small-Sample Single-Cell RNA-Seq Data via Feature Clustering and Selection. In: Nayak A., Sharma A. (eds) PRICAI 2019: Trends in Artificial Intelligence. PRICAI 2019. Lecture Notes in Computer Science. Springer, 2019.08

  • Kenichi Matsubara, Yoshiyuki Sakaki (Sup.). (Tatsuhiko Tsunoda etc. in part). Genomic Function - Expression Profile and Transcriptome. 2000.09 (ISBN : 978-4521610214)

display all >>

Conference Activities & Talks 【 display / non-display

  • Tatsuhiko Tsunoda. Deep Learning and Mathematical Sciences for Advancing Genomic Medicine. The 25th Annual Meeting of the Japanese Association for Molecular Target Therapy of Cancer 2021.05.27 Tokyo (online), Japan

  • Tatsuhiko Tsunoda. Genomic Medical Science through New Knowledge. The University of Tokyo Genomic Medical Science Research Organization 2020 Symposium 2021.03.25

  • Tatsuhiko Tsunoda. Exploring etiologies, sub-classification, and risk prediction of diseases based on big-data analysis of clinical and whole omics data in medicine. ERCIM-JST Joint Symposium on Big Data and Artificial Intelligence 2021.02.18

  • Tatsuhiko Tsunoda. Exploring etiologies, sub-classification, and risk prediction of diseases based on big-data analysis of clinical and whole omics data in medicine. CREST International Symposium on Big Data Application 2021.01.23

  • Tatsuhiko Tsunoda. Deep learning opens up new frontiers in genomic medicine. The 16th TR Workshop of the Japanese Association for Molecular Target Therapy of Cancer 2021.01.19

display all >>

Works 【 display / non-display

  • DeepInsight: Package of DeepInsight methodology,Software,2019.08

  • IMSIndel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis.,Software,2018.04

  • DRAGON: Matlab package of DRAGON clustering approach,Software,2017.09

  • 2D-EM: Matlab package of 2D-EM clustering approach,Software,2017.08

  • Arete - an analysis toolkit for network-based gene prioritisation,Software,2017.04

display all >>

Awards & Honors 【 display / non-display

  • Dream Challenges Certificate of Best Performance - Disease Module Identification DREAM Challenge Sub-Challenge 2,DREAM Challenge,2016.11

Others 【 display / non-display

  • Alzheimer disease associated genes were identified by RIKEN-TMDU,2018.08

    Appeared in newspaper Kagaku-Kougyou-Nippou

  • New Alzheimer disease causing genes were identified with an integrative analysis method,2018.08

    Appeared in newspaper YAKUJINIPPO

  • RIKEN et al identified new Alzheimer disease associated genes,2018.08

    Appeared in newspaper Nikkan Kougyou Shimbun

  • Two new Alzheimer disease causing genes were identified,2018.08

    Appeared in newspaper Medical News QLifePro

  • Alzheimer disease associated genes were identified,2018.08

    Appeared in newspaper NIKKEI-biotech

display all >>