Personnel Information

写真a

TSUNODA TATSUHIKO


Job title

Professor

Graduating School 【 display / non-display

  • The University of Tokyo, Faculty of Science, Graduated

Graduate School 【 display / non-display

  • The University of Tokyo, Graduate School, Division of Science, Master's Course, Completed

  • The University of Tokyo, Graduate School, Division of Engineering, Doctor's Course, Completed

Degree 【 display / non-display

  • Ph.D.(Medicine)

  • Ph.D.(Engineering)

Campus Career 【 display / non-display

  • 2015.07
    -
    Now
    Tokyo Medical and Dental University, Medical Research Institute, Medical Genomics, Medical Science Mathematics, Professor
  • 2015.12
    -
    2018.03
    Tokyo Medical and Dental University, Graduate School of Medical and Dental Sciences, Life Science and Technology, Life Science and Technology, Medical Science Mathematics, Professor
  • 2018.04
    -
    Now
    Tokyo Medical and Dental University, Graduate School of Medical and Dental Sciences, Medical and Dental Science and Technology, -, Professor

External Career 【 display / non-display

  • 2019.04
    -
    Now
    The University of Tokyo, Medical Science Mathematics, Department of Biological Sciences, Graduate School of Science, Professor
 

Published Papers & Misc 【 display / non-display

  • Abel Chandra, Alok Sharma, Abdollah Dehzangi, Daichi Shigemizu, Tatsuhiko Tsunoda. Bigram-PGK: phosphoglycerylation prediction using the technique of bigram probabilities of position specific scoring matrix. BMC Mol Cell Biol. 2019.12; 20 (Suppl 2): 57. ( PubMed, DOI )

  • Daichi Shigemizu, Shintaro Akiyama, Yuya Asanomi, Keith A Boroevich, Alok Sharma, Tatsuhiko Tsunoda, Takashi Sakurai, Kouichi Ozaki, Takahiro Ochiya, Shumpei Niida. A comparison of machine learning classifiers for dementia with Lewy bodies using miRNA expression data. BMC Med Genomics. 2019.10; 12 (1): 150. ( PubMed, DOI )

  • Sarvenaz Choobdar, Mehmet E Ahsen, Jake Crawford, Mattia Tomasoni, Tao Fang, David Lamparter, Junyuan Lin, Benjamin Hescott, Xiaozhe Hu, Johnathan Mercer, Ted Natoli, Rajiv Narayan, DREAM Module Identification Challenge Consortium (including Keith A. Boroevich, Piotr J. Kamola, Artem Lysenko, Tatsuhiko Tsunoda), Aravind Subramanian, Jitao D Zhang, Gustavo Stolovitzky, Zoltán Kutalik, Kasper Lage, Donna K Slonim, Julio Saez-Rodriguez, Lenore J Cowen, Sven Bergmann, Daniel Marbach. Assessment of network module identification across complex diseases. Nat. Methods. 2019.09; 16 (9): 843-852. ( PubMed, DOI )

  • Alok Sharma, Edwin Vans, Daichi Shigemizu, Keith A Boroevich, Tatsuhiko Tsunoda. DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture. Sci Rep. 2019.08; 9 (1): 11399. ( PubMed, DOI )

  • Kohji Kato, Fuyuki Miya, Nanako Hamada, Yutaka Negishi, Yoko Narumi-Kishimoto, Hiroshi Ozawa, Hidenori Ito, Ikumi Hori, Ayako Hattori, Nobuhiko Okamoto, Mitsuhiro Kato, Tatsuhiko Tsunoda, Yonehiro Kanemura, Kenjiro Kosaki, Yoshiyuki Takahashi, Koh-Ichi Nagata, Shinji Saitoh. de novo gain-of-function mutation in a patient with a novel megalencephaly syndrome. J. Med. Genet.. 2019.06; 56 (6): 388-395. ( PubMed, DOI )

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Books etc 【 display / non-display

  • Tatsuhiko Tsunoda, Toshihiro Tanaka, Yusuke Nakamura (Eds.). Genome-Wide Association Studies. Springer Nature, 2019.11 (ISBN : 978-9811381768)

  • Kenichi Matsubara, Yoshiyuki Sakaki (Sup.). (Tatsuhiko Tsunoda etc. in part). Genomic Function - Expression Profile and Transcriptome. 2000.09 (ISBN : 978-4521610214)

  • Yusuke Nakamura (Eds.) (Tatsuhiko Tsunoda etc. in part). SNP Strategy for Genetic Polymorphism. 2000.05 (ISBN : 978-4521610115)

  • Makoto Nagao, Satoshi Sato, Sadao Kurihashi, Tatsuhiko Tsunoda. Natural Language Processing (Iwanami Software Science Vol. 15). 1996.04 (ISBN : 978-4000103558)

Conference Activities & Talks 【 display / non-display

  • Tatsuhiko Tsunoda. Medical Big Data Analysis for Precision Medicine. CREST Joint International Symposium for Big Data 2019.03.12 Kyoto, Japan

  • Tatsuhiko Tsunoda. Cancer heterogeneity and immunology for precision medicine. CREST International Symposium on Big Data Application 2019.01.15 Tokyo, Japan

  • Tatsuhiko Tsunoda. Progress of Genomic Medicine and Promotion of Precision Medicine. Tohoku Medical Megabuck the 16th Genome and Omics Collaboration Promoting Seminar 2018.12.04

  • Tatsuhiko Tsunoda. Trans-omic and Trans-species Analysis Drives Precision Medicine. The 41st Annual Meeting of the Molecular Biology Society of Japan 2018.11.30 Yokohama, Japan

  • Tatsuhiko Tsunoda. Trans-omic Analysis Strategy for Precision Medicine. The 2nd International Symposium for Trans-Omics 2018.11.14

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Works 【 display / non-display

  • DeepInsight: Package of DeepInsight methodology,Software,2019.08

  • IMSIndel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis.,Software,2018.04

  • DRAGON: Matlab package of DRAGON clustering approach,Software,2017.09

  • 2D-EM: Matlab package of 2D-EM clustering approach,Software,2017.08

  • Arete - an analysis toolkit for network-based gene prioritisation,Software,2017.04

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Awards & Honors 【 display / non-display

  • Dream Challenges Certificate of Best Performance - Disease Module Identification DREAM Challenge Sub-Challenge 2,DREAM Challenge,2016.11

Others 【 display / non-display

  • New Alzheimer disease causing genes were identified with an integrative analysis method,2018.08

    Appeared in newspaper YAKUJINIPPO

  • RIKEN et al identified new Alzheimer disease associated genes,2018.08

    Appeared in newspaper Nikkan Kougyou Shimbun

  • Two new Alzheimer disease causing genes were identified,2018.08

    Appeared in newspaper Medical News QLifePro

  • Alzheimer disease associated genes were identified,2018.08

    Appeared in newspaper NIKKEI-biotech

  • RIKEN, TMDU, and Tohoku U discovered new Alzheimer disease causing genes,2018.08

    Appeared in newspaper NIKKEI inc.

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